Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0608.Seq
         (864 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   3.1  
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    23   3.1  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   4.1  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    22   5.4  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    22   5.4  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   5.4  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 754 TRAYDRAY*EFLRLWGDNCKPQSPARRKFQRVAPGLLGQGEHADS 620
           +R + RA     RLW +         R+F R    L+ +G HA++
Sbjct: 535 SRVWPRAAAAAERLWTNPSDYVKQTERRFYRHRERLVARGIHAEA 579


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = +3

Query: 459 ASLFRCARPRVAQLTDE 509
           A++F C +P++ +++DE
Sbjct: 17  AAIFTCVKPQLTRISDE 33


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +3

Query: 603 TRATLKESACSPWP-RRP 653
           TR TLK +  SP+P +RP
Sbjct: 256 TRTTLKNNRASPYPMQRP 273


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -1

Query: 363 KKELLICQSFRCPGLVRFPVLSQIKPQAPLLVVPFRHSFKFQL 235
           K  L +   ++  G+++FP+ +     +  L +PF +S+ F L
Sbjct: 50  KTPLPLTLLYKLLGIIQFPISAHFSFMSRFLCLPF-YSYFFYL 91


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -1

Query: 363 KKELLICQSFRCPGLVRFPVLSQIKPQAPLLVVPFRHSFKFQL 235
           K  L +   ++  G+++FP+ +     +  L +PF +S+ F L
Sbjct: 6   KTPLPLTLLYKLLGIIQFPISAHFSFMSRFLCLPF-YSYFFYL 47


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 433 RYRN*PDKSLHQLRTAMHHH 374
           R RN PD S H LR+    H
Sbjct: 53  RLRNVPDNSFHFLRSLKKVH 72


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,298
Number of Sequences: 336
Number of extensions: 4422
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23789590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)