Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0608.Seq
         (864 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0841 + 32129863-32130294,32130395-32130459,32130565-321307...    29   3.6  
12_01_0117 + 893924-893971,894944-895003,895024-895174,895410-89...    28   8.4  
07_01_0130 - 963856-965454                                             28   8.4  

>02_05_0841 +
           32129863-32130294,32130395-32130459,32130565-32130774,
           32130943-32131024
          Length = 262

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 322 PGEISRVESN*AAGSTPGGALPSFL*VSALQPYSPRSP 209
           PGE+S +ES+ A G      LPS    SA Q   P+ P
Sbjct: 176 PGEVSDLESDLAGGQKRSRPLPSAATASAQQATRPKIP 213


>12_01_0117 +
           893924-893971,894944-895003,895024-895174,895410-895884,
           895974-896316,896347-896391,896533-896631,896708-896828,
           897032-897255
          Length = 521

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 279 PLLVVPFRHSFKFQLCNHTPPGVQNLWFPGSCPPS 175
           PL    F HS + +  N  PP   +  FPGS P S
Sbjct: 58  PLHSTAFSHSLRPRRPNGPPPAFASAEFPGSVPDS 92


>07_01_0130 - 963856-965454
          Length = 532

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 403 HQLRTAMHHHPPNQERAVNLSILPVSGPGEISR 305
           H +   +   PPN     NL +LP+ GP ++ +
Sbjct: 195 HIINFLLRPEPPNTLSVDNLGVLPIIGPAKVGK 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,453,333
Number of Sequences: 37544
Number of extensions: 599095
Number of successful extensions: 1490
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1490
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)