Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0608.Seq
(864 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 3e-10
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 4e-08
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 4e-08
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 4e-08
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 4e-08
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_50595| Best HMM Match : Herpes_US9 (HMM E-Value=2.5) 40 0.003
SB_36940| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.006
SB_48355| Best HMM Match : Herpes_US9 (HMM E-Value=4.7) 32 0.69
SB_17609| Best HMM Match : Herpes_US9 (HMM E-Value=4.7) 32 0.69
SB_28753| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_34797| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_27909| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_22783| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_4723| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_57065| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_30350| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_23080| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
SB_56573| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_29700| Best HMM Match : DUF551 (HMM E-Value=8.8) 28 8.5
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 62.9 bits (146), Expect = 3e-10
Identities = 30/40 (75%), Positives = 32/40 (80%)
Frame = +2
Query: 20 SWIVAREXSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 139
SWI R +AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 4 SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 56.0 bits (129), Expect = 4e-08
Identities = 27/35 (77%), Positives = 29/35 (82%)
Frame = +2
Query: 35 REXSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 139
R +AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 56.0 bits (129), Expect = 4e-08
Identities = 27/35 (77%), Positives = 29/35 (82%)
Frame = +2
Query: 35 REXSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 139
R +AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 56.0 bits (129), Expect = 4e-08
Identities = 27/35 (77%), Positives = 29/35 (82%)
Frame = +2
Query: 35 REXSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 139
R +AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 56.0 bits (129), Expect = 4e-08
Identities = 27/35 (77%), Positives = 29/35 (82%)
Frame = +2
Query: 35 REXSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 139
R +AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 45
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 54.4 bits (125), Expect = 1e-07
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = +2
Query: 44 SAKAFAKGVFINQERKLEVRRRLDTALVLTVN 139
+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 31 TAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 62
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 47.2 bits (107), Expect = 2e-05
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +2
Query: 50 KAFAKGVFINQERKLEVRRRLDTALVLTVN 139
++ AK VFINQERKLE RRR DT LVLT+N
Sbjct: 14 ESIAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 44.0 bits (99), Expect = 2e-04
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +2
Query: 44 SAKAFAKGVFINQERKLEVRRRLDT 118
+AKAFAK VFINQERKLE RRR DT
Sbjct: 4 TAKAFAKNVFINQERKLEDRRRSDT 28
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +2
Query: 50 KAFAKGVFINQERKLEVRRRLDTALVLTVN 139
++ + VFINQERKLE RRR DT LVLT+N
Sbjct: 14 ESICQDVFINQERKLEDRRRSDTVLVLTIN 43
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +1
Query: 13 VKFLDRRKRXISESICQRCFHQSRTKV 93
VKFLD RK ESICQ F K+
Sbjct: 2 VKFLDLRKTNYCESICQDVFINQERKL 28
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = +2
Query: 71 FINQERKLEVRRRLDTALVLTVN 139
FINQERKLE RRR DT LVLT+N
Sbjct: 21 FINQERKLEDRRRSDTVLVLTIN 43
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = +2
Query: 71 FINQERKLEVRRRLDTALVLTVN 139
FINQERKLE RRR DT LVLT+N
Sbjct: 21 FINQERKLEDRRRSDTVLVLTIN 43
Score = 33.5 bits (73), Expect = 0.23
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +1
Query: 13 VKFLDRRKRXISESICQRCFHQSRTKV 93
VKFLD RK ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = +2
Query: 71 FINQERKLEVRRRLDTALVLTVN 139
FINQERKLE RRR DT LVLT+N
Sbjct: 21 FINQERKLEDRRRSDTVLVLTIN 43
Score = 33.5 bits (73), Expect = 0.23
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +1
Query: 13 VKFLDRRKRXISESICQRCFHQSRTKV 93
VKFLD RK ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
>SB_50595| Best HMM Match : Herpes_US9 (HMM E-Value=2.5)
Length = 101
Score = 39.9 bits (89), Expect = 0.003
Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +2
Query: 578 MPLDVLGPHARYTEGISMFSLA*KARGNPLKLPSCWGLGFAIIPP*TKEFLVSAIISSRX 757
MPLDVLG HARYT+G++ L K GN +K ++ +EFLVSA
Sbjct: 1 MPLDVLGRHARYTDGVNESFLRRKGVGNLVKHRRAGDRSLQLL-IFNEEFLVSASHQLAL 59
Query: 758 L-RLPFV 775
+ LPFV
Sbjct: 60 ITSLPFV 66
>SB_36940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 38.7 bits (86), Expect = 0.006
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +2
Query: 578 MPLDVLGPHARYTEGISMFSLA*KA 652
MPLDVLGPHARYT+G++ L KA
Sbjct: 1 MPLDVLGPHARYTDGVNESFLRRKA 25
>SB_48355| Best HMM Match : Herpes_US9 (HMM E-Value=4.7)
Length = 98
Score = 31.9 bits (69), Expect = 0.69
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 596 GPHARYTEGISMFSLA*KARGNPLKLPSCWGLGFAIIPP*TKEFLVSAIISSRXL-RLPF 772
GPHARYT+G++ L K GN +K ++ +EFLVSA + LPF
Sbjct: 4 GPHARYTDGVNESFLRRKGVGNLVKHRRAGDRSLQLLIL-NEEFLVSASHQLALITSLPF 62
Query: 773 V 775
V
Sbjct: 63 V 63
>SB_17609| Best HMM Match : Herpes_US9 (HMM E-Value=4.7)
Length = 98
Score = 31.9 bits (69), Expect = 0.69
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 596 GPHARYTEGISMFSLA*KARGNPLKLPSCWGLGFAIIPP*TKEFLVSAIISSRXL-RLPF 772
GPHARYT+G++ L K GN +K ++ +EFLVSA + LPF
Sbjct: 4 GPHARYTDGVNESFLRRKGVGNLVKHRRAGDRSLQLLIL-NEEFLVSASHQLALITSLPF 62
Query: 773 V 775
V
Sbjct: 63 V 63
>SB_28753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 596 GPHARYTEGISMFSLA*KARGNPLKLPSCWGLGFAIIPP*TKEFLVSAIISSRXL-RLPF 772
GPHARYT+G++ L+ + GN +K ++ +EFLVSA + LPF
Sbjct: 4 GPHARYTDGVNESFLSTEGVGNLVKHRRAGDRSLQLL-IFNEEFLVSASHQLALITSLPF 62
Query: 773 V 775
V
Sbjct: 63 V 63
>SB_34797| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = -1
Query: 705 IIANPNPQHEGSFSGLPRAF*ARENMLIPSV*RACGPRTSKGITD 571
IIA PQH+ PR A+E ++ PRTSKGITD
Sbjct: 8 IIAMIYPQHDDVLQDYPR-LPAKERLVDTVSVARVRPRTSKGITD 51
>SB_27909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = -1
Query: 705 IIANPNPQHEGSFSGLPRAF*ARENMLIPSV*RACGPRTSKGITD 571
IIA PQH+ PR A+E ++ PRTSKGITD
Sbjct: 106 IIAMIYPQHDDVLQDYPR-LPAKERLVDTVSVARVRPRTSKGITD 149
>SB_22783| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 29.5 bits (63), Expect = 3.7
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 578 MPLDVLGPHARYTEGISMFSLA*KARGNPLKLPSCWGLGFAIIPP*TKEFLVSAIISSRX 757
MPLDVLG RYT+G++ + GN +K ++ +EFLVSA
Sbjct: 1 MPLDVLGRTRRYTDGVNESFPRPEGVGNLVKHRRAGDRSLQLL-IFNEEFLVSASHQLAL 59
Query: 758 L-RLPFV 775
+ LPFV
Sbjct: 60 ITSLPFV 66
>SB_4723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = -1
Query: 705 IIANPNPQHEGSFSGLPRAF*ARENMLIPSV*RACGPRTSKGITD 571
IIA PQH+ PR A+E ++ PRTSKGITD
Sbjct: 38 IIAMIYPQHDDVLQDYPR-LPAKERLVDTVSVARVRPRTSKGITD 81
>SB_57065| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = -1
Query: 705 IIANPNPQHEGSFSGLPRAF*ARENMLIPSV*RACGPRTSKGITD 571
IIA PQH+ PR A+E ++ PRTSKGITD
Sbjct: 38 IIAMIYPQHDDVLQDYPR-LPAKERLVDTVSVARVRPRTSKGITD 81
>SB_30350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 29.1 bits (62), Expect = 4.9
Identities = 30/89 (33%), Positives = 35/89 (39%)
Frame = +3
Query: 588 MSWGRTRATLKESACSPWPRRPGATR*NFLRAGDWGLQLSPHKRRNS**ARS*ARVXYAC 767
M WGRTRATL P P G RAGD +L A + +
Sbjct: 1 MFWGRTRATLTGQRVFPSP-EGGGNLVKHRRAGDRSCKLLIFNEEFLVSASHQLALITSL 59
Query: 768 PL*KTARR**PIEXLVXVXRDRKRGGFNG 854
P TARR + LV D +RG NG
Sbjct: 60 PFVHTARRYYRLNGLVR-PSDWRRGPGNG 87
>SB_23080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = -1
Query: 705 IIANPNPQHEGSFSGLPRAF*ARENMLIPSV*RACGPRTSKGITD 571
IIA PQH+ PR A+E ++ PRTSKGITD
Sbjct: 38 IIAMIYPQHDDVSQDYPR-LPAKERLVDTVSVARVRPRTSKGITD 81
>SB_56573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -1
Query: 303 LSQIKPQAPLLVVPFRHSFKFQLCNHTPP 217
+ Q K P LV SF C HTPP
Sbjct: 453 IPQTKTHGPSLVKELSESFSSVFCKHTPP 481
>SB_29700| Best HMM Match : DUF551 (HMM E-Value=8.8)
Length = 86
Score = 28.3 bits (60), Expect = 8.5
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = -1
Query: 705 IIANPNPQHEGSFSGLPRAF*ARENMLIPSV*RACGPRTSKGITD 571
IIA PQH+ PR A+E ++ PRTSKGITD
Sbjct: 38 IIAMIYPQHDDISEDYPR-LPAKERLVDTVSVAHVRPRTSKGITD 81
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,531,072
Number of Sequences: 59808
Number of extensions: 611238
Number of successful extensions: 1362
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -