Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0608.Seq
         (864 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    24   6.9  
AY344825-1|AAR02436.1|  153|Anopheles gambiae peritrophin A prot...    23   9.1  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   9.1  

>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 23.8 bits (49), Expect = 6.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 619 RNQHVLPGLEGPGQPAETSFVLGIG 693
           R    +PGLEGP  P   + V G G
Sbjct: 325 RGNDGIPGLEGPSGPKGDAGVPGYG 349


>AY344825-1|AAR02436.1|  153|Anopheles gambiae peritrophin A
           protein.
          Length = 153

 Score = 23.4 bits (48), Expect = 9.1
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -1

Query: 285 QAPLLVVPFRHSFKFQLCNHTPPGVQNLWFPGSCPP 178
           Q P+L+       KF +CNH  P V        CPP
Sbjct: 29  QPPVLLAHSTDCDKFLICNHGTPVV------SKCPP 58


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.4 bits (48), Expect = 9.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 686 PSTKEVSAGCPGPSRPG 636
           P T+ VSAGCP  S  G
Sbjct: 621 PVTRRVSAGCPQGSMLG 637


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 898,101
Number of Sequences: 2352
Number of extensions: 19773
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 92199573
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)