Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0608.Seq
         (864 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK125190-1|BAC86077.1|  188|Homo sapiens protein ( Homo sapiens ...    33   1.3  
AJ003125-1|CAA05880.1| 1211|Homo sapiens procollagen I N-protein...    32   3.1  

>AK125190-1|BAC86077.1|  188|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43200 fis, clone FEBRA2007793. ).
          Length = 188

 Score = 33.1 bits (72), Expect = 1.3
 Identities = 19/46 (41%), Positives = 21/46 (45%)
 Frame = +2

Query: 155 PPTLLQWLGGQLPGNQRFWTPGGVWLQS*NLKE*RKGTTRSGACGL 292
           P T L W GGQ    Q    P G W  S N +  R+   R G CGL
Sbjct: 13  PETPLSWPGGQRSTLQE--PPRGRWATSPNKRHTRRPLARGGICGL 56


>AJ003125-1|CAA05880.1| 1211|Homo sapiens procollagen I N-proteinase
            protein.
          Length = 1211

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = -2

Query: 614  CSARAAPGHLRASQTCYCSISCGSKT---PVPLR 522
            CS    PG  RA     CS++CG+ T   PVP R
Sbjct: 970  CSRELCPGRWRAGPWSQCSVTCGNGTQERPVPCR 1003


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,471,273
Number of Sequences: 237096
Number of extensions: 3308965
Number of successful extensions: 7348
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7341
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11039988564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)