Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0608.Seq
         (864 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical pr...    31   1.4  
AL032649-4|CAA21703.2|  511|Caenorhabditis elegans Hypothetical ...    30   2.4  
AL032649-3|CAA21702.2|  502|Caenorhabditis elegans Hypothetical ...    30   2.4  
U23517-11|AAY44017.1|  288|Caenorhabditis elegans Hypothetical p...    29   5.7  
Z70684-4|CAA94599.1|  234|Caenorhabditis elegans Hypothetical pr...    28   9.9  

>Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical
           protein F45E6.4 protein.
          Length = 333

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 264 PFRHSFKFQLCNHTPPGVQNLWFPGSCPPSHCSN 163
           P +H+F F  C     G++  +FPG+CP   CS+
Sbjct: 204 PCQHAFAFPAC-----GMETGFFPGTCPEMTCSS 232


>AL032649-4|CAA21703.2|  511|Caenorhabditis elegans Hypothetical
           protein Y55D9A.2b protein.
          Length = 511

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/62 (35%), Positives = 30/62 (48%)
 Frame = +1

Query: 79  SRTKVRGSKAIRYRPSSNRKYVI*RSADVTTMARRAASGKPKILDSGGSMVAKLKLKGMT 258
           S + + GS A +  P   RK+ +      +T A  AA+  PK LDSG      LK  G +
Sbjct: 393 SSSDMYGSCAAKPMPEGQRKFDL-----PSTSAAVAAAAAPKPLDSGNVGFKLLKSMGWS 447

Query: 259 EG 264
           EG
Sbjct: 448 EG 449


>AL032649-3|CAA21702.2|  502|Caenorhabditis elegans Hypothetical
           protein Y55D9A.2a protein.
          Length = 502

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/62 (35%), Positives = 30/62 (48%)
 Frame = +1

Query: 79  SRTKVRGSKAIRYRPSSNRKYVI*RSADVTTMARRAASGKPKILDSGGSMVAKLKLKGMT 258
           S + + GS A +  P   RK+ +      +T A  AA+  PK LDSG      LK  G +
Sbjct: 393 SSSDMYGSCAAKPMPEGQRKFDL-----PSTSAAVAAAAAPKPLDSGNVGFKLLKSMGWS 447

Query: 259 EG 264
           EG
Sbjct: 448 EG 449


>U23517-11|AAY44017.1|  288|Caenorhabditis elegans Hypothetical
           protein D1022.9 protein.
          Length = 288

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 271 QEWSLRLNLTQHGKSHQARTPEGLTD*QLFLD 366
           Q W L L    H K + ARTP  + D ++F++
Sbjct: 59  QYWPLMLARFSHEKPYVARTPAAIADAEMFIN 90


>Z70684-4|CAA94599.1|  234|Caenorhabditis elegans Hypothetical
           protein F28D1.4 protein.
          Length = 234

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 631 VLPGLEGPGQPAETSFVLGIG 693
           + PG+ GPG PAE  F L  G
Sbjct: 32  IWPGILGPGNPAEGGFKLNAG 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,849,333
Number of Sequences: 27780
Number of extensions: 447426
Number of successful extensions: 1176
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)