Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0608.Seq
         (864 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29780.1 68415.m03618 kelch repeat-containing F-box family pr...    31   0.99 
At2g42000.1 68415.m05195 plant EC metallothionein-like family 15...    30   2.3  
At5g56120.1 68418.m07001 expressed protein similar to unknown pr...    29   3.0  
At1g14930.1 68414.m01784 major latex protein-related / MLP-relat...    29   4.0  
At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putati...    28   9.2  

>At2g29780.1 68415.m03618 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 398

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 592 PGAARALH*RNQHVLPGLEGPGQPAETSFVLG--IGVCNYPP 711
           PG+A        +V+ GL GP  P +T FV+   +  CNY P
Sbjct: 138 PGSAVVTIGYKMYVIGGLIGPNNPVKTVFVIDCRVHTCNYLP 179


>At2g42000.1 68415.m05195 plant EC metallothionein-like family 15
           protein 84 C-terminal residues identical to EC protein
           homolog 1 (SP:P93746) {Arabidopsis thaliana}; contains
           Pfam PF02068: Plant PEC family metallothionein profile;
          Length = 115

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -2

Query: 668 SAGCPGPSRPGRTC*FLQCSARAAPGHLRASQTCYCSISCG 546
           S GCP P   G +C   +C  R A    +    C C   CG
Sbjct: 47  SCGCPSPCPGGNSC---RCRMREASAGDQGHMVCPCGEHCG 84


>At5g56120.1 68418.m07001 expressed protein similar to unknown
           protein (dbj|BAA81760.1)
          Length = 236

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -2

Query: 299 VKLSRRLHSWWCPSVIPLSFSFATILPPESKIFGFPEAARRAIVVTSADR*MTYLRLEL 123
           VK +     WW PS + L+ S   +   ++K+F F +  R      + +R +T   LEL
Sbjct: 117 VKSNAVCKKWWIPSAVSLATSLVLVFLVQAKLFVFWKVYRGVNRERNDNRTLTRCVLEL 175


>At1g14930.1 68414.m01784 major latex protein-related / MLP-related
           low similarity to major latex protein {Papaver
           somniferum}[GI:20810] ; contains Pfam profile PF00407:
           Pathogenesis-related protein Bet v I family
          Length = 155

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +1

Query: 220 GSMVAKLKLKGMTEGHHQEWSLRLNLTQHGKSHQARTPEGLTD*QLFLDSVGG-GAWPFL 396
           G  VA++ LKG  E H++ W  + NL      H     +G+T      DS G   +W + 
Sbjct: 5   GKYVAEVPLKGSAEKHYRRWRSQNNLFPDAIGHHV---QGVTVHDGDWDSHGSIKSWNYT 61

Query: 397 VGGAICLVNSGNERD 441
           + G   ++    E D
Sbjct: 62  LDGKPEVIKEKREID 76


>At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putative
           / LHCI type II, putative very strong similarity to PSI
           type II chlorophyll a/b-binding protein Lhca2*1
           GI:541565 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00504 chlorophyll A-B binding protein
          Length = 270

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 237 LCNHTPPGVQNLWFPGSCPP 178
           +C   PP  + LWFPGS PP
Sbjct: 57  VCEPLPPD-RPLWFPGSSPP 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,105,238
Number of Sequences: 28952
Number of extensions: 424824
Number of successful extensions: 991
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)