Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0607.Seq
         (830 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    31   0.015
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    23   3.0  
DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory pro...    21   9.1  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 30.7 bits (66), Expect = 0.015
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +2

Query: 458 IHYTLCNVVNMLPCVYCFFYFSV--TTHCIIHNDVNSHRTFYIIH**PCCLWFIFIMNVL 631
           IH     V+ +L C+Y F+Y  +  T H ++   +     FY +H   CC + IF M++L
Sbjct: 224 IHLLFYCVLIILLCIYYFYYAFILFTVHLLLLVCIYY---FYYMHLLFCCAFIIFTMHLL 280



 Score = 25.0 bits (52), Expect = 0.74
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 443 LYYKYIHYTLCNV-VNMLPCVYCFFYFSVTTHC 538
           +YY Y  + L  V + +L C+Y F+Y  +   C
Sbjct: 238 IYYFYYAFILFTVHLLLLVCIYYFYYMHLLFCC 270



 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 571 FLHYTLMTLLFMVYFYNECFTKTCM*YVY 657
           F+ +T+  LL   YFY       C+ Y Y
Sbjct: 89  FIIFTVHFLLCTYYFYYAFIILLCVYYFY 117



 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 482 VNMLPCVYCFFYFSVTTHCIIH 547
           V+ L C Y F+Y  +   C+ +
Sbjct: 94  VHFLLCTYYFYYAFIILLCVYY 115


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -3

Query: 741 CDPXIFXIYLPRFKNLVIKIRGDAVGNVVHILHTRF 634
           C   IF +Y     ++   +  + +GN++ ++H RF
Sbjct: 258 CVIVIFELYY--LSHVCQNVSTEVIGNILRLMHRRF 291


>DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory
           protein 14 protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 124 CFKKNSTKKLRHEITLHELIKNK 192
           C K N   K      LH LIKNK
Sbjct: 72  CAKCNEKHKEGVRKVLHHLIKNK 94


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,897
Number of Sequences: 336
Number of extensions: 3951
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22829180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)