Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0607.Seq
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    28   1.9  
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe...    26   5.7  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    25   10.0 

>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 717 YLPRFKNLVIKIRGDAVGNVVHILHTRFC 631
           +L + K++ I++  D  GNV+H LH R C
Sbjct: 236 FLDKPKHIEIQLMADKAGNVIH-LHERDC 263


>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = -1

Query: 476 CKACNEYIYNIIDYHFIPHTQQSVLTTE------IGVLSASFLTVSIA*KLTRIC 330
           C  C    Y I+DY F      S+LT++      I  L++  +  ++A + T+IC
Sbjct: 221 CFTCENLKYIILDYSFRDIKNNSILTSKESRKAVIDFLTSKTILENMAERKTKIC 275


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 531 HIVSSTTTSTRIALSTLYID 590
           HIV ST+T +++A +  Y+D
Sbjct: 324 HIVQSTSTPSKVAAAKYYLD 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,048
Number of Sequences: 5004
Number of extensions: 60733
Number of successful extensions: 150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)