Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0607.Seq
         (830 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0460 - 18098187-18098248,18098331-18098399,18098468-180994...    29   6.0  

>10_08_0460 -
           18098187-18098248,18098331-18098399,18098468-18099434,
           18100089-18100808,18100942-18101031,18101076-18101138,
           18101223-18101366,18101471-18101527,18101606-18101680,
           18101757-18101836,18101937-18102050,18102166-18102258,
           18102470-18102553,18102812-18102859,18105207-18105337,
           18105903-18106135
          Length = 1009

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -2

Query: 649 TTYTFL*NIHYKNKP*TTRSSMYNVESAMRVDVVVDDTMCRYGKIKKTI 503
           T YT+  N+  KN+P   + S   V    R  VV+  T C+   + K +
Sbjct: 523 TKYTYKCNLQGKNEPANKKKSNEQVTEQQRETVVLVKTNCKCTMVAKEV 571


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,833,078
Number of Sequences: 37544
Number of extensions: 327054
Number of successful extensions: 595
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)