Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0607.Seq
         (830 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               30   2.6  
SB_55341| Best HMM Match : Mt_ATP-synt_B (HMM E-Value=0.0013)          29   3.5  
SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)               29   6.1  
SB_29763| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 411  LLRVRYEMIVNYIINIFITRFATSLTCCLVFIVFFIFP 524
            L RV Y++  +Y I  +      +L+CCL+F+V  + P
Sbjct: 1298 LPRVIYDLSSSYQIAFYAAGACATLSCCLLFLVPVLMP 1335


>SB_55341| Best HMM Match : Mt_ATP-synt_B (HMM E-Value=0.0013)
          Length = 185

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 702 KNLVIKIRGDAVGNVVHILHTRFCKTFIIK-INHKQQGHQCI 580
           +N  IK   DA+ N  H+ H   C+T II+ +  K+   QCI
Sbjct: 136 RNASIKHLQDAIDNEKHLEHMLSCRTDIIEMMREKESISQCI 177


>SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)
          Length = 554

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 473 KACNEYIYNIIDYHFIPHTQQSVLTT 396
           + C E++   IDYH IP  +    TT
Sbjct: 240 RPCREFVLEAIDYHLIPERRACTRTT 265


>SB_29763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/17 (58%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
 Frame = -1

Query: 476 CKACNEYI-YNIIDYHF 429
           C A N+Y+ YN+IDYH+
Sbjct: 35  CLAMNDYLEYNVIDYHY 51


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,207,345
Number of Sequences: 59808
Number of extensions: 438248
Number of successful extensions: 1047
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)