Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0607.Seq
         (830 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49449-1|AAB00117.1|  339|Caenorhabditis elegans olfactory recep...    30   2.3  
U42830-6|AAC48279.2|  339|Caenorhabditis elegans Odorant respons...    30   2.3  
AL132862-28|CAB60545.2|  610|Caenorhabditis elegans Hypothetical...    29   5.4  
U29488-1|AAA68773.2|  338|Caenorhabditis elegans Serpentine rece...    28   7.1  
U97008-16|AAB52300.1|  303|Caenorhabditis elegans Serpentine rec...    28   9.4  

>U49449-1|AAB00117.1|  339|Caenorhabditis elegans olfactory receptor
           Odr-10 protein.
          Length = 339

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +1

Query: 541 HPQRRQLASHFLHYTLMTLLFMVYFYNECFTKTCM*YVYDVANRVAPYLNYQIFK 705
           H   + L   F+HY +M++ F+V FY    T   M    DV++R    L  Q+FK
Sbjct: 196 HIYLKNLLGCFVHYFVMSMTFVVMFYCGYATWKTMNEHKDVSDRTRA-LQKQLFK 249


>U42830-6|AAC48279.2|  339|Caenorhabditis elegans Odorant response
           abnormal protein10 protein.
          Length = 339

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +1

Query: 541 HPQRRQLASHFLHYTLMTLLFMVYFYNECFTKTCM*YVYDVANRVAPYLNYQIFK 705
           H   + L   F+HY +M++ F+V FY    T   M    DV++R    L  Q+FK
Sbjct: 196 HIYLKNLLGCFVHYFVMSMTFVVMFYCGYATWKTMNEHKDVSDRTRA-LQKQLFK 249


>AL132862-28|CAB60545.2|  610|Caenorhabditis elegans Hypothetical
           protein Y73F8A.19 protein.
          Length = 610

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 200 LCSYVQCA*CEFLNFLDSGMLSQFGMQLE 286
           LC Y Q   C FL+++ SG   +FG+ ++
Sbjct: 286 LCRYQQLRVCSFLDYIRSGTSLKFGIAID 314


>U29488-1|AAA68773.2|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 31 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 583 TLMTLLFMVYFYNECFTKTCM*YVYDVANRVAPYLN 690
           T   L F+++FYN    K  +  VYD  +R   Y N
Sbjct: 198 TFFVLSFVIFFYNRTQEKGIIHNVYDTESRYKSYEN 233


>U97008-16|AAB52300.1|  303|Caenorhabditis elegans Serpentine
           receptor, class sx protein24 protein.
          Length = 303

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 449 YKYIHYTLCNVVNMLP--CVYCFFYFSVTTHCII 544
           Y Y+  TLC ++++L   C + F+   V T+C++
Sbjct: 121 YYYLMVTLCALISLLVTFCKFVFYSDEVVTNCLL 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,775,590
Number of Sequences: 27780
Number of extensions: 345434
Number of successful extensions: 836
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)