Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0607.Seq
         (830 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   2.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   6.0  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.0  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              22   8.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   8.0  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 440 QLYYKYIHYTLCNVVNML-PCVYCFFYFSVTTHCIIHN 550
           +L Y Y   T  ++   + P   C +YFS T + I++N
Sbjct: 280 RLLYVYEDSTYDDINQWVYPLTGCLYYFSTTINPILYN 317


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 506 CFFYFSVTTHCIIHN 550
           C +YFS T + I++N
Sbjct: 315 CLYYFSTTINPILYN 329


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -1

Query: 404 LTTEIGVLSASFLTVSIA*KLTRICMERDRFRTFAARGAVPTAYQI 267
           L   +GV S + +   +  K+ R C+  D   T +   A   A QI
Sbjct: 515 LQIRVGVHSGAVVAGIVGLKMPRYCLFGDSVNTASRMEATSQAMQI 560


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 422 HTQQSVLTTEIGV 384
           HT+QSV  TE G+
Sbjct: 27  HTEQSVCKTETGI 39


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 426 YEMIVNYIINIFITRFATSLTCCLVFIVFFIF 521
           +EM +    N+F+     +  C L F+V F F
Sbjct: 267 FEMKIKRKHNVFVNNILAASACSL-FVVIFHF 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,267
Number of Sequences: 438
Number of extensions: 4366
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)