Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0607.Seq
         (830 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68820.1 68414.m07868 membrane protein, putative contains 7 t...    30   1.6  
At4g16150.1 68417.m02450 calmodulin-binding protein similar to a...    30   2.2  
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:...    28   6.6  

>At1g68820.1 68414.m07868 membrane protein, putative contains 7
           transmembrane domains; similar to inhibitor of
           apoptosis-2 IAP-2 (GI:20043383) [Mamestra configurata
           nucleopolyhedrovirus]
          Length = 468

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = +3

Query: 234 FLTFSIAEC*ANLVCSWNSAPSGKGTKTIPFHTNTS*LLRYRD 362
           F+ F IAEC A LVC+  S  S      IP  +++S ++RY D
Sbjct: 186 FINFGIAECFAFLVCTKWSNQSIHRYSHIPEPSSSSMVVRYLD 228


>At4g16150.1 68417.m02450 calmodulin-binding protein similar to
           anther ethylene-upregulated calmodulin-binding protein
           ER1 GI:11612392 from [Nicotiana tabacum]
          Length = 906

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 37  NTYSSYVGEQNTINVIL*RTKALLSNNYSCFKKNSTKKLRHEITLHEL 180
           N+YSS + +  +  ++   T + + N  +  + NS     HEI LHE+
Sbjct: 152 NSYSSSITDHLSPKIVAEDTSSGVHNTCNTVRSNSLGSRNHEIRLHEI 199


>At1g04600.1 68414.m00454 myosin, putative similar to myosin
            (GI:499047) [Arabidopsis thaliana]
          Length = 1730

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 682  YLNYQIFKTW*IDREYXRVTTGAKLK 759
            Y+N Q+F +  ++REY  V  G K+K
Sbjct: 1561 YINVQLFNSLLLEREYCTVNMGIKVK 1586


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,068,648
Number of Sequences: 28952
Number of extensions: 287836
Number of successful extensions: 593
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)