Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0603.Seq
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho... 69 5e-13
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 29 0.51
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 29 0.68
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 27 2.7
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 2.7
SPBPJ4664.03 |mfm3||M-factor precursor Mfm3|Schizosaccharomyces ... 26 6.3
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 26 6.3
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 25 8.3
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 8.3
>SPAC1F12.02c |p23fy||translationally controlled tumor protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 69.3 bits (162), Expect = 5e-13
Identities = 37/86 (43%), Positives = 54/86 (62%)
Frame = -1
Query: 509 DSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNK 330
+ E+ ++V + RL T +F DKKSY Y+K YMK + A+L+E P++V VF+ N
Sbjct: 59 EEGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIG 116
Query: 329 VMKDILGRFKELQFFTGESMDCDGML 252
+K IL FK+ F+ GESMD D M+
Sbjct: 117 FVKKILANFKDYDFYIGESMDPDAMV 142
Score = 63.7 bits (148), Expect = 3e-11
Identities = 30/57 (52%), Positives = 43/57 (75%), Gaps = 1/57 (1%)
Frame = -2
Query: 682 MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQ-GDIQIEGFNPSAEEADE 515
M +YKD+I+GDE+ SD Y +K VD+++YE ++VT Q GD+ I G NPSAE+A+E
Sbjct: 1 MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEE 56
Score = 30.3 bits (65), Expect = 0.29
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -3
Query: 255 VAMMEYRDFDGTQIPIMMFFKHGLEEEKF 169
V +M YR+ DG P M+FFK GL EKF
Sbjct: 142 VVLMNYRE-DGIT-PYMIFFKDGLVSEKF 168
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 29.5 bits (63), Expect = 0.51
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -1
Query: 488 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKT 342
+D V ++L+E F ++K T+YLK + L K + PD VE T
Sbjct: 89 IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 29.1 bits (62), Expect = 0.68
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 128 ASLELLSYFLSNI*NFSSSRPCLKNIMIGICVPSKSLY 241
AS ELL+ NFS+ R CL+N ++ CVP +Y
Sbjct: 781 ASFELLNNLTEARKNFSNYRDCLENCVLP-CVPFLGVY 817
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 490 PLSTAESCPRQPLQPKD*NPRSGYHPVLSSPTYRSLRK*LHRPIS 624
P+S ++S PK N +G P SSPT ++RP S
Sbjct: 328 PISVSQSSDSSSSIPKKSNDEAGGSPSKSSPTRPGFNDYVNRPTS 372
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -1
Query: 380 EEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMLP*WNIE 234
E+ +Q E K+ + K++ EL+ E++D DG N+E
Sbjct: 1479 EQITKEQFEQLKSEKERTEKELADSKNELEHLQSEAVDADGKTEISNLE 1527
>SPBPJ4664.03 |mfm3||M-factor precursor Mfm3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 41
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 208 DWYLRTIKVSIFHHGNMPSQSIDSPVKN 291
D T+ S+ + GN PS++++ VKN
Sbjct: 2 DSMANTVSSSVVNTGNKPSETLNKTVKN 29
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 454 VSTSLWFRTMSTPLSTAESCPRQPLQP 534
+S S T S+P TA P QPLQP
Sbjct: 270 MSVSPGVETTSSPFFTAPVEPNQPLQP 296
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 288 ELKFLKPAEDVFHYFVHVCFKYFNLVR 368
+ FLKP ++ YF+ + +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -2
Query: 544 FNPSAEEADEGTTRPSRAELT*S*TTG*SKHTPSVTRNPTHCTSKT 407
+NPS D G P ++ T S T T S+T PT ++ T
Sbjct: 826 YNPSQYGCDNGALGPVQSSSTTSSITPTPTTTSSITPTPTTTSTTT 871
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,047,527
Number of Sequences: 5004
Number of extensions: 65008
Number of successful extensions: 178
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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