Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0603.Seq
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...    64   1e-10
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116...    30   2.2  
01_05_0176 - 18957676-18958067,18958139-18958242,18958358-189584...    29   3.8  
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395...    29   5.0  
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534...    29   5.0  
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239...    28   6.6  

>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 39/88 (44%), Positives = 50/88 (56%)
 Frame = -1

Query: 515 GHDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNM 336
           G D      VDIV   RL E   F DKK +  ++K Y+K L AKL+    ++ E FK N+
Sbjct: 59  GVDDQAVKVVDIVDTFRLQEQPPF-DKKQFVTFMKRYIKNLSAKLDA---EKQEEFKKNI 114

Query: 335 NKVMKDILGRFKELQFFTGESMDCDGML 252
               K +LG+ K+LQFF GESM  DG L
Sbjct: 115 EGATKYLLGKLKDLQFFVGESMHDDGGL 142



 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
 Frame = -2

Query: 682 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEG 512
           M +Y+D++TGDE+ SD++  + ++  +++EV G+ V +   D+ I G NPSAE    DEG
Sbjct: 1   MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAEGGGDDEG 59


>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
            1164082-1164240,1164663-1164797,1165116-1165268,
            1165358-1165479,1165599-1166541,1166677-1166728,
            1166873-1167963,1168058-1168384,1168479-1168559,
            1168649-1168717,1168809-1168937,1169038-1169121,
            1169210-1169275
          Length = 1321

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = -1

Query: 443  GDKKSYTL-YLKDYMKKLV-AKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESM 270
            G +K  TL  L++Y+  +V A L+    +Q+E FK  +NKV        K L+ F+ + M
Sbjct: 1140 GSEKMVTLDNLEEYVSSIVDATLKSGISNQIEAFKAGINKVF-----ALKTLRLFSEDEM 1194

Query: 269  D 267
            +
Sbjct: 1195 E 1195


>01_05_0176 -
           18957676-18958067,18958139-18958242,18958358-18958483,
           18959495-18959628,18959757-18959894,18960835-18960964,
           18961316-18961357,18964741-18965024
          Length = 449

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +3

Query: 171 ISLLLDHV*KTS*LVFAYHQSLYIPSWQHAITIHRLPSKE 290
           +S +L+   KT+  +F Y   LY+P++   + +HRLP+++
Sbjct: 343 LSFVLEPTPKTARRMF-YGSLLYLPAFMAGLLLHRLPNEQ 381


>10_01_0359 +
           3956527-3956616,3957623-3957818,3958102-3959418,
           3959482-3960445,3960588-3960648,3961500-3961946
          Length = 1024

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = -1

Query: 470 HRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 291
           H L+   A  D  S +L  ++++   V   +E+A  Q+EV K  +    K+I     EL 
Sbjct: 177 HELIRAGAENDALSRSLEEREHLMMKVGGEKEQAESQIEVLKGTIQSGEKEISSLKYELH 236

Query: 290 FFTGE 276
             + E
Sbjct: 237 VLSKE 241


>09_04_0741 -
           19852339-19852497,19853185-19853246,19853352-19853415,
           19853561-19853614,19853744-19853890,19854460-19854564,
           19854651-19854794,19854987-19855093,19855613-19855712,
           19855804-19855833,19856492-19856608,19856705-19856828,
           19857143-19857189,19857272-19857400,19857777-19857852,
           19858446-19858543,19858630-19858671,19858811-19859044
          Length = 612

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 216 FAYHQSLYIPSWQHAITIHRLPSKELKFLKPAEDV 320
           F YH  +Y+ SW H      + SK++K + P  D+
Sbjct: 264 FLYHGRMYVSSW-HICFHSNVFSKQIKVMLPLRDI 297


>02_01_0336 +
           2397648-2397812,2398367-2398441,2398860-2398975,
           2399155-2399269,2399360-2399488,2399809-2399856,
           2400369-2400448,2400628-2400824,2400916-2401202,
           2401281-2401307,2401353-2401538,2401633-2402094,
           2402201-2402350,2402612-2402687,2402851-2402978,
           2403244-2403435,2403559-2403690,2403767-2403889,
           2404128-2404346,2404518-2404679
          Length = 1022

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 368 APSLPILLLIFSYSL*GTMCRISCHRRRMFRLA 466
           APS  +   + SYSL GT   +   RR +F LA
Sbjct: 687 APSFQVAFSLMSYSLEGTDSLLPSRRRSLFTLA 719


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,722,068
Number of Sequences: 37544
Number of extensions: 381836
Number of successful extensions: 951
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)