Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0603.Seq
(725 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-10|CAB02099.1| 181|Caenorhabditis elegans Hypothetical p... 69 3e-12
AF101316-3|AAC69232.2| 508|Caenorhabditis elegans Hypothetical ... 29 2.6
Z81549-2|CAB04473.1| 167|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p... 29 4.5
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr... 29 4.5
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 4.5
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 4.5
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein. 29 4.5
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 29 4.5
Z48544-2|CAA88437.1| 766|Caenorhabditis elegans Hypothetical pr... 28 5.9
U40958-3|ABQ13075.1| 219|Caenorhabditis elegans Hypothetical pr... 28 5.9
>Z79754-10|CAB02099.1| 181|Caenorhabditis elegans Hypothetical
protein F25H2.11 protein.
Length = 181
Score = 68.9 bits (161), Expect = 3e-12
Identities = 31/56 (55%), Positives = 41/56 (73%)
Frame = -2
Query: 682 MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQGDIQIEGFNPSAEEADE 515
M IYKDI T DE+ SD++ MKLVD+++YE G+ V R +G+I + G NPSAEE E
Sbjct: 1 MLIYKDIFTDDELSSDSFPMKLVDDLVYEFKGKHVVRKEGEIVLAGSNPSAEEGAE 56
Score = 62.9 bits (146), Expect = 2e-10
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Frame = -1
Query: 515 GHDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQ--VEVFKT 342
G D VE G+DIVLNH+LVE + D + Y+K +MK ++ +E+ D+ V+ FK
Sbjct: 59 GSDEHVERGIDIVLNHKLVEMNCYEDASMFKAYIKKFMKNVIDHMEKNNRDKADVDAFKK 118
Query: 341 NMNKVMKDILG--RFKELQFFTGE 276
+ + +L RFK L FF GE
Sbjct: 119 KIQGWVVSLLAKDRFKNLAFFIGE 142
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = -3
Query: 255 VAMMEYRDFDGTQIPIMMFFKHGLEEEK 172
VA++EYRD DGT++P +M K + EEK
Sbjct: 153 VAIIEYRDVDGTEVPTLMLVKEAIIEEK 180
>AF101316-3|AAC69232.2| 508|Caenorhabditis elegans Hypothetical
protein F52F10.2 protein.
Length = 508
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 330 FVHVCFKYFNLVRRLLFQFCY*FFHI 407
F+++C +Y RR L FCY F I
Sbjct: 137 FIYLCIEYLPTGRRYLMMFCYILFDI 162
>Z81549-2|CAB04473.1| 167|Caenorhabditis elegans Hypothetical
protein F55C9.3 protein.
Length = 167
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +1
Query: 193 FEKHHDWYLRTIKVSIFHHGNMPSQSIDSPVKN*SSLNLPRMSFITLFMFVLNT 354
F + ++ LR K+ +FH N SPV+ LN + SF+T F NT
Sbjct: 93 FRRRYNVELRHPKLRLFHFTN--ETQAKSPVETPFFLNHKKSSFLTFFNCFFNT 144
>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -1
Query: 437 KKSYTLYLKDYMKKLVAKLEEK 372
+K+Y YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775
>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -1
Query: 437 KKSYTLYLKDYMKKLVAKLEEK 372
+K+Y YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -1
Query: 455 TYAFG--DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 291
T+ FG D++ Y++ +KD KKL + E+ + TN K + G+ K L+
Sbjct: 11103 TFNFGQKDQEQYSMVMKDVSKKLARQNAEEIQSGKLIPTTNEEKTGLALTGKNKNLK 11159
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -1
Query: 455 TYAFG--DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 291
T+ FG D++ Y++ +KD KKL + E+ + TN K + G+ K L+
Sbjct: 11103 TFNFGQKDQEQYSMVMKDVSKKLARQNAEEIQSGKLIPTTNEEKTGLALTGKNKNLK 11159
>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
Length = 1781
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -1
Query: 437 KKSYTLYLKDYMKKLVAKLEEK 372
+K+Y YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = -2
Query: 703 NRLHPIKMKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQGDIQIEGFNPSAEE 524
NR+H I Y+++ DEM +D + + Y++ L+ R+ G E F S+
Sbjct: 2601 NRVHLIMKSEYEELAEHDEMIADIIP-RDETSIQYKMINFLLFRSNG----ESFEESSRR 2655
Query: 523 ADE 515
ADE
Sbjct: 2656 ADE 2658
>Z48544-2|CAA88437.1| 766|Caenorhabditis elegans Hypothetical
protein ZK945.3 protein.
Length = 766
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = -1
Query: 440 DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKE 297
+KK+ L L +K + K+EEKA K+ ++K +KD L R K+
Sbjct: 22 EKKAKGLKLNKVDRKRIVKIEEKA-----ALKSKVDKAVKDELERLKK 64
>U40958-3|ABQ13075.1| 219|Caenorhabditis elegans Hypothetical
protein F09F9.5 protein.
Length = 219
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 378 FQFCY*FFHIVFEVQCVGFLVTEGVCF 458
+Q C+ F H+ +GF GVCF
Sbjct: 53 YQTCFGFMHVKIATCSIGFFALLGVCF 79
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,660,709
Number of Sequences: 27780
Number of extensions: 355078
Number of successful extensions: 998
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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