Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0603.Seq
         (725 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16640.1 68416.m02127 translationally controlled tumor family...    57   1e-08
At3g05540.1 68416.m00607 translationally controlled tumor family...    56   2e-08
At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR...    33   0.15 
At4g29060.1 68417.m04157 elongation factor Ts family protein sim...    32   0.45 
At5g51800.1 68418.m06423 expressed protein                             30   1.8  
At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)...    27   9.6  
At1g78390.1 68414.m09135 9-cis-epoxycarotenoid dioxygenase, puta...    27   9.6  

>At3g16640.1 68416.m02127 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 168

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 36/88 (40%), Positives = 46/88 (52%)
 Frame = -1

Query: 515 GHDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNM 336
           G D + +  VDIV   RL E   + DKK +  Y+K Y+K L  KL E+  DQ  VFK  +
Sbjct: 59  GVDDSTQKVVDIVDTFRLQEQPTY-DKKGFIAYIKKYIKLLTPKLSEE--DQA-VFKKGI 114

Query: 335 NKVMKDILGRFKELQFFTGESMDCDGML 252
               K +L R  + QFF GE M  D  L
Sbjct: 115 EGATKFLLPRLSDFQFFVGEGMHDDSTL 142



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
 Frame = -2

Query: 682 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEADE 515
           M +Y+D++TGDE+ SD++  K ++  +++EV G+ VT    D+ I G NPSAEE  E
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNI-GANPSAEEGGE 56


>At3g05540.1 68416.m00607 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 156

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 30/83 (36%), Positives = 48/83 (57%)
 Frame = -1

Query: 515 GHDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNM 336
           G D      VDI+   RL E  +F DKK + +++K Y+K+L  KL+    +  E+FK ++
Sbjct: 46  GVDDQAVKVVDIIDTFRLQEQPSF-DKKQFVMFMKRYIKQLSPKLDS---ENQELFKKHI 101

Query: 335 NKVMKDILGRFKELQFFTGESMD 267
               K ++ + K+ QFF GESM+
Sbjct: 102 ESATKFLMSKLKDFQFFVGESME 124



 Score = 36.7 bits (81), Expect = 0.016
 Identities = 18/52 (34%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
 Frame = -2

Query: 682 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSA 530
           M +Y+DI+TGDE+ SD++  K ++  +++EV G+  +  +G  + EG +  A
Sbjct: 1   MLVYQDILTGDELLSDSFPYKEIENGMLWEVEGKNPSGEEGG-EDEGVDDQA 51


>At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1355

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
 Frame = -1

Query: 515 GHDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLK-------DYMKKLVAKLEEKAPDQV 357
           G D   +SG++ +  + +   Y  G+  + +LY +       D M+  + KL    P  +
Sbjct: 184 GIDWRKQSGLETLAPYYISVKYFSGNPLALSLYEEMLSHMKSDKMEVKLLKLNHPPPQIM 243

Query: 356 EVFKTNMNKVMKDILGRFKELQ-FFTGESMD 267
           EVFK+N N + ++    F ++  FF GE  D
Sbjct: 244 EVFKSNYNALNENEKSMFLDIACFFRGEKAD 274


>At4g29060.1 68417.m04157 elongation factor Ts family protein
           similar to SP|P35019 Elongation factor Ts (EF-Ts)
           {Galdieria sulphuraria}; contains Pfam profiles PF00627:
           UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
           S1 RNA binding domain
          Length = 953

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = -2

Query: 655 GDEMFSDTYKMKLVDEVIYEVT--GRLVTRAQGDIQIEGFNPSAEEADEG 512
           G+   S   K +++D V+  +T  G  +T  +G+   EGF P+AEEAD+G
Sbjct: 238 GEGFNSKFAKGQMLDGVVKNLTRSGAFITIGEGE---EGFLPTAEEADDG 284


>At5g51800.1 68418.m06423 expressed protein
          Length = 972

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -2

Query: 703 NRLHPIKMKIYKDIITGDEMFSDTYKMKLVD--EVIYEVTGRLVTR 572
           N   P++  +YKD+  G E+F      +L+D   + Y++ G +++R
Sbjct: 535 NLRFPLRPDVYKDLPQGKELFFSISSTELLDCRAITYDIIGPIMSR 580


>At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)
           family protein similar to SP|P41972 Isoleucyl-tRNA
           synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase)
           (IleRS) {Staphylococcus aureus}; contains Pfam profile
           PF00133: tRNA synthetases class I (I, L, M and V)
          Length = 1093

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = -1

Query: 338 MNKVMKDILGRFKELQFFTGE---SMDCDGM 255
           +NK++KDI+ R+K LQ +  +     DC G+
Sbjct: 167 LNKILKDIINRYKLLQNYKVQYVPGWDCHGL 197


>At1g78390.1 68414.m09135 9-cis-epoxycarotenoid dioxygenase,
           putative / neoxanthin cleavage enzyme, putative /
           carotenoid cleavage dioxygenase, putative similar to
           9-cis-epoxycarotenoid dioxygenase [Phaseolus
           vulgaris][GI:6715257]; similar to neoxanthin cleavage
           enzyme GI:9857290 from [Vigna unguiculata]
          Length = 657

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 468 VVQDYVNSALDGRVVPSSASSAEGLKPSIWISPCALVTNL 587
           VV  YV+S+++ +   SS+  +   KP  W   C  VTNL
Sbjct: 95  VVPCYVSSSVNKKSSVSSSLQSPTFKPPSWKKLCNDVTNL 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,549,213
Number of Sequences: 28952
Number of extensions: 325482
Number of successful extensions: 891
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)