Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0599.Seq
         (871 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2194|AAN11859.1| 1257|Drosophila melanogaster CG11006-P...    31   2.7  
AE014296-2192|AAN11860.2| 1272|Drosophila melanogaster CG11006-P...    31   2.7  
X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein.         30   3.6  
AE014296-2193|AAN11858.1| 1294|Drosophila melanogaster CG11006-P...    29   6.3  

>AE014296-2194|AAN11859.1| 1257|Drosophila melanogaster CG11006-PB,
           isoform B protein.
          Length = 1257

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 26/69 (37%), Positives = 32/69 (46%)
 Frame = +2

Query: 254 MSAHLDGGARYPIRPIVSRITIHWPSFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPA 433
           MSA  +GGA     P+    T   PS     TG   A  +L++  H PL   GVI K   
Sbjct: 1   MSAPSEGGAGGG--PVGGGSTATAPS----ATGSLSASASLVSHSHPPLQLRGVINKYSL 54

Query: 434 PIALPNSCA 460
           P  LP+S A
Sbjct: 55  PSHLPSSAA 63


>AE014296-2192|AAN11860.2| 1272|Drosophila melanogaster CG11006-PD,
           isoform D protein.
          Length = 1272

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 26/69 (37%), Positives = 32/69 (46%)
 Frame = +2

Query: 254 MSAHLDGGARYPIRPIVSRITIHWPSFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPA 433
           MSA  +GGA     P+    T   PS     TG   A  +L++  H PL   GVI K   
Sbjct: 16  MSAPSEGGAGGG--PVGGGSTATAPS----ATGSLSASASLVSHSHPPLQLRGVINKYSL 69

Query: 434 PIALPNSCA 460
           P  LP+S A
Sbjct: 70  PSHLPSSAA 78


>X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein.
          Length = 1494

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -3

Query: 680  DGFSPFDVGVHVL**WTLVPNWNNTQPYLGLFF*FIRDFADFGLLVKK*ADLTK 519
            DG  P D G+  +  + +  N +  Q +LGL   F R   DF  L K   D+ K
Sbjct: 923  DGIMPNDKGIEAIKNFPIPNNVHTVQSFLGLCSYFRRFIKDFSRLAKPLHDILK 976


>AE014296-2193|AAN11858.1| 1294|Drosophila melanogaster CG11006-PC,
           isoform C protein.
          Length = 1294

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 347 TGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCA 460
           TG   A  +L++  H PL   GVI K   P  LP+S A
Sbjct: 63  TGSLSASASLVSHSHPPLQLRGVINKYSLPSHLPSSAA 100


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,731,057
Number of Sequences: 53049
Number of extensions: 691986
Number of successful extensions: 1335
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4209111660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)