Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0597.Seq
         (884 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   0.60 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   0.60 
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    24   1.4  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    23   4.2  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    23   4.2  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   7.4  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   9.7  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 840 PTGIQPPMLGNDPXPPTLNRT*VLMT 763
           PTG+ PP  G  P PP L+    ++T
Sbjct: 226 PTGLIPPHPGLSPHPPHLSSHPAIVT 251


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 840 PTGIQPPMLGNDPXPPTLNRT*VLMT 763
           PTG+ PP  G  P PP L+    ++T
Sbjct: 118 PTGLIPPHPGLSPHPPHLSSHPAIVT 143


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 569 LPLESGYCSHSGSPAGRQKSHYH*RT 646
           LP++S + S +G PAG Q+     RT
Sbjct: 49  LPVDSLHSSMAGYPAGNQRKQRRERT 74


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 113 CWQLRQNRRQCPEALRYVRPA 175
           CW    +R QC   L Y R A
Sbjct: 114 CWNGEASRYQCSPGLAYDREA 134


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 113 CWQLRQNRRQCPEALRYVRPA 175
           CW    +R QC   L Y R A
Sbjct: 114 CWNGEASRYQCSPGLAYDREA 134


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -1

Query: 209 TGPSGRCSWGLALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSH 72
           TGP  R   G   +   +AP G+ +  D V  K      T PE  H
Sbjct: 276 TGPQQRVLSGYHALSGLKAPPGVEHFEDVVHKKCSNF--TLPEIQH 319


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 264 CQREHVPDRQPPGDRHSAVKSSWFC 338
           C  ++ P+R PP D    V    FC
Sbjct: 151 CDIDNDPNRAPPCDPAVCVLPDCFC 175


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,059
Number of Sequences: 336
Number of extensions: 5856
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24513621
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)