Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0597.Seq
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    29   0.88 
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    28   2.0  
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ...    27   3.6  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    27   3.6  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    27   4.7  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    26   6.2  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    26   8.2  

>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
 Frame = -1

Query: 452 DYAV-DKKAIDTXRVRHCSAIAWSL*HRKPACRKISPSTAKPTGLHC*MAVAWRLAIRNM 276
           DYA+ D+KA+     R+C  + W   +  P+ +    S  K +G+   M V   LA R  
Sbjct: 265 DYAIYDEKAVGIESGRYCETVGWVSINGIPSFK----SLVKLSGISSLMGVESYLAER-- 318

Query: 275 FPLAFMQRSTAKTGRMGYALSETGPSGRCSWGLALVERNEAPLGIVYGS 129
             L F+  S  ++ +  ++  ++  S   S+  + ++ N  P G ++ S
Sbjct: 319 --LRFIGESIRRSSQQIFSSLQSAKSASVSFSRSYIDWN--PEGFMFHS 363


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 151 GASLRSTSARPHEHLPLGPVSERAYPMRPVFAVLLCINAS 270
           GAS+      P   +P G +S +A        V+LC+ AS
Sbjct: 309 GASMSGDLKAPSRSIPKGTISSQATTFLLYLLVILCVGAS 348


>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 384

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
 Frame = +3

Query: 414 AXCIDRFFINRIIHPFLIGRNKQIRRRTR----FNLRARVDDEALHLYEDLVMLPCYHWN 581
           A C+ R  + RI+ PF     K++R R       NL +   D+ + L +D+V LP   ++
Sbjct: 51  AYCLQRKQLGRIVVPFFNIPRKELRLRPELSYLLNLASISSDDIVFL-DDIVKLPKRIFS 109

Query: 582 RAIVVTPDHPLAGKK 626
             I +  DH    +K
Sbjct: 110 NPIYLV-DHNSLDRK 123


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +3

Query: 486 RRRTRFNLRARVDDEALHLYEDLVMLPCYHWNRAIVVTPDH----PLAGKKAITIEELAQ 653
           RR +++  R+ + DEA    E   M+P     + +V+  DH    P+   K + +  L+Q
Sbjct: 551 RRISKYKFRSVLIDEATQASEPECMIPLVLGAKQVVLVGDHQQLGPVVMNKKVALASLSQ 610


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 552 LVMLPCYHWNRAIVVTPDHPLAGKKAITIEELAQYPLVTYTFGFT 686
           LV   C HWN+    TP   +     +T++ L +  L T  F FT
Sbjct: 279 LVAFTCKHWNKLSRATPFAMV--NSMLTLKPLPKLQLATPNFIFT 321


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 465 IGRNKQIRRRTRFNLRARVDDEALHL 542
           + +NKQIRR    +  A+V D  LHL
Sbjct: 145 VDQNKQIRRGRSRSFSAKVSDPNLHL 170


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 122 LRQNRRQCPEALRYVRPAPGPTNIFRWGQFRRERI 226
           LR+  +  PE  R  R    PTN+ +  + +RE I
Sbjct: 368 LRERYKHIPEIRRIARHRHLPTNVKKAAEIKREEI 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,108,012
Number of Sequences: 5004
Number of extensions: 92780
Number of successful extensions: 265
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)