Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0597.Seq
(884 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0057 + 25253497-25253589,25253722-25253799,25254583-252546... 31 1.6
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 30 2.8
07_03_1315 - 25722757-25722876,25722972-25723328,25723924-257245... 30 2.8
05_01_0522 - 4506667-4507254,4507474-4507824,4507967-4508163,450... 30 2.8
01_03_0165 + 13356499-13356834,13356840-13357046,13357206-13357544 30 2.8
11_04_0457 + 17916177-17916526,17917397-17917523,17917887-179182... 29 5.0
05_05_0323 - 24098962-24099866,24099941-24100442 29 5.0
05_01_0608 + 5429901-5429982,5430610-5431058,5436758-5437183,543... 29 6.6
04_04_1334 - 32723950-32724121,32724527-32724558,32724665-327247... 29 6.6
02_05_1003 + 33430757-33431674,33431774-33431926,33432476-33432772 29 6.6
07_01_0003 + 16711-17016,17107-17177,17269-17461,17929-17984,185... 28 8.7
05_03_0242 + 10823312-10823342,10823662-10823732,10824010-108240... 28 8.7
04_04_0500 - 25677767-25680850 28 8.7
03_02_0856 - 11815684-11815701,11816019-11816194,11817878-11818670 28 8.7
>05_06_0057 +
25253497-25253589,25253722-25253799,25254583-25254621,
25254724-25255263,25255352-25255450,25255614-25255691,
25255961-25256146,25256240-25256365
Length = 412
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = -3
Query: 876 GEHQTRNKFGNRPTGIQPPMLGNDPXPPTLNRT*VLMTHIRCR 748
G QT G P QPP L N P P T VL + CR
Sbjct: 253 GNPQTSFLTGQPPLPNQPPPLPNQPPPQLYQITRVLALEVSCR 295
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = -2
Query: 202 PAEDVRGAWRWSNVTKRLWALSTVLTQLPAKG*KWLPPSRKIHIKKWNIR 53
PA D W S + + +ALS +L QLP KW P +R+ ++ + +R
Sbjct: 234 PAMDAVPLWLASVICELWFALSWILDQLP----KWSPVTRETYLDRLALR 279
>07_03_1315 -
25722757-25722876,25722972-25723328,25723924-25724500,
25724577-25725265,25725487-25725822,25726190-25726527,
25726619-25726746,25726906-25727030,25727547-25727589,
25727714-25727802,25728396-25728511,25729157-25729276,
25729752-25729794
Length = 1026
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/55 (30%), Positives = 22/55 (40%)
Frame = +2
Query: 32 YALPQQQPDIPLFYVNLPGRWQPLLPLCWQLRQNRRQCPEALRYVRPAPGPTNIF 196
Y LP Q PDIP + RW +C L ++ RPA G +F
Sbjct: 7 YGLPNQPPDIPQILLEAQNRWLRPTEICHILSNYKKFSIAPEPPNRPASGSLFLF 61
>05_01_0522 -
4506667-4507254,4507474-4507824,4507967-4508163,
4508324-4508582,4508656-4508868,4508946-4509071,
4509159-4509296,4509376-4509721,4509822-4510088,
4510427-4510616,4510700-4510784,4510885-4511072,
4511262-4511457,4512027-4512113
Length = 1076
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -2
Query: 202 PAEDVRGAWRWSNVTKRLWALSTVLTQLPAKG*KWLPPSRKIHIKKWNIR 53
P D G W S + + +ALS +L Q P KW P +R+ ++ + +R
Sbjct: 293 PVRDAYGLWLVSVICEIWFALSWLLDQFP----KWYPINRETYLDRLALR 338
>01_03_0165 + 13356499-13356834,13356840-13357046,13357206-13357544
Length = 293
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 619 PASG*SGVTTIARFQW*HGNITKSSYRCSA-SSSTLARRLKRVRLRICLFLPIRNG 455
P SG T+A H + S++ A S TL R K +R+ I LP+R+G
Sbjct: 221 PMGSSSGTPTMANLDQIHYLVGGSAFSIDALESPTLLVRCKTLRIAIQFMLPLRHG 276
>11_04_0457 +
17916177-17916526,17917397-17917523,17917887-17918287,
17918496-17918704,17919328-17919449,17920437-17920562,
17920675-17920801,17920945-17921000
Length = 505
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -2
Query: 652 CASSSMVMAFLPASG*SGVTTIARFQW*HGNITKSSYRCSASSSTLA 512
C S +A P SG + H + +SS RC+ASSSTL+
Sbjct: 47 CRSPGCALAARPTCASSGCFPVPAA---HSRMRRSSLRCAASSSTLS 90
>05_05_0323 - 24098962-24099866,24099941-24100442
Length = 468
Score = 29.1 bits (62), Expect = 5.0
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Frame = -1
Query: 272 PLAFMQ----RSTAKTGRMGYALSETGPSGRCSWGLALVERNEAPLGI----VYGSDAVA 117
P+AF Q R A R+GY L E G G CS +V R E + V SDA A
Sbjct: 368 PIAFDQPIVARLVADEWRIGYGLRENGDGGGCS---GVVGREEIAAAVRRLMVMDSDAAA 424
Query: 116 SKGVK 102
++ K
Sbjct: 425 AEEAK 429
>05_01_0608 +
5429901-5429982,5430610-5431058,5436758-5437183,
5437270-5437643,5437655-5438113,5438191-5438361,
5438442-5438760
Length = 759
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 479 FISADQKWMDYAVDKKAIDTXRVRHCSAIAWSL*HRK-PACRKISPSTAKPTGL 321
FI+ D K++ +AIDT ++ S + W HRK P + P+ T L
Sbjct: 570 FIAVDFKYLRDLYRVRAIDTNLLKCYSLLTWKHVHRKAPHVALLDPAVVNKTTL 623
>04_04_1334 -
32723950-32724121,32724527-32724558,32724665-32724708,
32724962-32725123,32725984-32726422
Length = 282
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 226 PMRPVFAVLLCINASGNMFR 285
P+ PVF VL I A+GN+FR
Sbjct: 117 PLEPVFRVLREIGAAGNLFR 136
>02_05_1003 + 33430757-33431674,33431774-33431926,33432476-33432772
Length = 455
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 658 RW*HIPSALPDVQNWILAFNR 720
RW H+P+ALPD+ +L+F +
Sbjct: 34 RWRHLPAALPDIVLDVLSFRK 54
>07_01_0003 +
16711-17016,17107-17177,17269-17461,17929-17984,
18511-18588,18873-18929,19396-19903
Length = 422
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 576 WNRAIVVTPDHPLAGKKAITIEELAQYPL 662
WN +I++ P PL + A+ L YPL
Sbjct: 4 WNTSILLPPPPPLLSRAAVATPALNPYPL 32
>05_03_0242 +
10823312-10823342,10823662-10823732,10824010-10824021,
10827329-10827394,10827564-10827766,10827977-10828266,
10828377-10828468,10829876-10830344,10830670-10830978,
10831290-10831364,10831457-10831614
Length = 591
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +1
Query: 172 SARPHEHLPLGPVSERAYPMRPVFAVLLCINASGNMFRIANRQATAIQQ*SPVGFAVDGE 351
S R LPL S R Y + V A + + A G R+A + ++Q+ G +
Sbjct: 113 SLRSPFFLPLNRRSSRWYKLAGVLAARIVLGARGRTSRVAQKWRDSLQEGGKAGGVLSCP 172
Query: 352 IF 357
+F
Sbjct: 173 LF 174
>04_04_0500 - 25677767-25680850
Length = 1027
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +3
Query: 174 RQAPRTSSAGASFGESVSHAPSFCSASLHKCQREHVPDRQPPGDRHS 314
R AP +A S ++ S+A S S+ +C H D PP RHS
Sbjct: 27 RLAPAAVAALGSHPDASSYA-SLLSSLSRECHARHPFDASPPRARHS 72
>03_02_0856 - 11815684-11815701,11816019-11816194,11817878-11818670
Length = 328
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +2
Query: 173 APGPTNIFRWGQFRRERIPCAQ-FLQCFFA*MPAGTCSGSPTARRPPFSSEVQLVLLSM 346
A G N+F W Q RR R Q +Q A A S SP+A P ++ V + +
Sbjct: 81 AVGDANVFYWFQNRRSRSRRRQRQMQAAAAAAAAAASSSSPSANTSPAAASAATVQVGL 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,135,724
Number of Sequences: 37544
Number of extensions: 719930
Number of successful extensions: 2096
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2096
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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