Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0597.Seq
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70205-4|CAA94115.2|  528|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z98853-5|CAB57903.1|  290|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AL032627-2|CAB63353.2|  521|Caenorhabditis elegans Hypothetical ...    28   7.7  

>Z70205-4|CAA94115.2|  528|Caenorhabditis elegans Hypothetical
           protein C11H1.5 protein.
          Length = 528

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
 Frame = +1

Query: 640 KNWRNIR------W*HIPSALPDVQNWILAFNRAGLTPRIVFTAT 756
           K WR+ R      W  IP++ P  +  + AF RAG  P +  T+T
Sbjct: 187 KQWRDDRIASATKWTSIPTSTPSYREHLQAFGRAGGVPLLHITST 231


>Z98853-5|CAB57903.1|  290|Caenorhabditis elegans Hypothetical
           protein R08A2.5 protein.
          Length = 290

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 256 KEALQKLGAWDTLSPKLAPAEDVRGAWRWSNVTKRL 149
           K+AL  +       P+  P +D++G W  + ++KR+
Sbjct: 71  KKALDTIAQMMNTCPRGFPIQDIKGLWHVTRISKRM 106


>AL032627-2|CAB63353.2|  521|Caenorhabditis elegans Hypothetical
           protein Y41C4A.2 protein.
          Length = 521

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -1

Query: 287 IRNMFPLAFMQRSTAKTG--RMGYALSETGPSGRCSWGLALVERNEAPLGIVYGSDA 123
           +RN+  + F+  S +KT   R  +AL +  P G C    ALV    AP G     DA
Sbjct: 145 LRNLGAIPFVTTSISKTPHPRNPWAL-DCSPGGLCGGEAALVADGGAPFGFAPDLDA 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,347,434
Number of Sequences: 27780
Number of extensions: 558501
Number of successful extensions: 1398
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1398
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)