Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0597.Seq
         (884 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               25   0.93 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   2.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   2.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   8.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.6  

>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -3

Query: 372 KASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKKHCKNWAHGI 223
           +A ++KD   +SK +W +L    ++  GD E     +     C    HGI
Sbjct: 22  EADIKKDCRKESKVSWAAL---KKMKAGDMEQDDQNLKCYLKCFMTKHGI 68


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +2

Query: 2   NHKMLSLSHCYALPQQQPDIPLFYVNLPGRWQPLLPLCWQLRQNRRQCPEALRYVRPA 175
           N+K L  ++   + Q    +P++Y N P R  P+ P  W   Q   Q P   RY+ P+
Sbjct: 112 NYKKLYKNYIINIEQIPVPVPVYYGNFPPR--PMGP--WISMQ--EQIPR-FRYIGPS 162


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +2

Query: 2   NHKMLSLSHCYALPQQQPDIPLFYVNLPGRWQPLLPLCWQLRQNRRQCPEALRYVRPA 175
           N+K L  ++   + Q    +P++Y N P R  P+ P  W   Q   Q P   RY+ P+
Sbjct: 112 NYKKLYKNYIINIEQIPVPVPVYYGNFPPR--PMGP--WISMQ--EQIPR-FRYIGPS 162


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 337 AVDGEIFLHAGFRCYNDQ 390
           A D E+   AG +CYND+
Sbjct: 754 ACDCEMTCPAGCKCYNDR 771


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 604 ITRWQAKKPLPLKNWRNI 657
           IT+WQ     PL +W ++
Sbjct: 419 ITQWQGNPISPLNDWYSL 436


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
 Frame = -1

Query: 821 PCLA--MTPYPQPLTGRK 774
           P LA  + P PQPLTG++
Sbjct: 215 PTLACPLNPNPQPLTGQQ 232


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 148 RGASLRSTSARPHE 189
           R ASL ST + PHE
Sbjct: 637 RDASLSSTHSHPHE 650


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 279,270
Number of Sequences: 438
Number of extensions: 7044
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)