Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0597.Seq
(884 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g44030.1 68418.m05388 cellulose synthase, catalytic subunit (... 32 0.44
At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit (... 32 0.58
At4g39350.1 68417.m05570 cellulose synthase, catalytic subunit (... 31 0.77
At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit, ... 31 1.0
At5g45460.1 68418.m05585 expressed protein 30 2.3
At1g53990.1 68414.m06151 GDSL-motif lipase/hydrolase family prot... 30 2.3
At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit (... 29 4.1
At3g54950.1 68416.m06092 patatin-related low similarity to patat... 29 4.1
At2g41190.1 68415.m05087 amino acid transporter family protein l... 29 4.1
At4g39470.1 68417.m05584 chloroplast lumen common family protein 29 5.4
At3g56310.2 68416.m06260 alpha-galactosidase, putative / melibia... 28 9.5
At3g56310.1 68416.m06259 alpha-galactosidase, putative / melibia... 28 9.5
>At5g44030.1 68418.m05388 cellulose synthase, catalytic subunit
(IRX5) nearly identical to cellulose synthase
[Arabidopsis thaliana] GI:27462651; contains Pfam
profile PF03552: Cellulose synthase
Length = 1049
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = -2
Query: 208 LAPAEDVRGAWRWSNVTKRLWALSTVLTQLPAKG*KWLPPSRKIHIKKWNIR 53
L PA+D W S + + +ALS +L Q P KW P +R+ ++ + ++R
Sbjct: 234 LTPAKDAYPLWLISVICEIWFALSWILDQFP----KWFPINRETYLDRLSMR 281
>At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit
(IRX3) identical to gi:5230423
Length = 1026
Score = 31.9 bits (69), Expect = 0.58
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -2
Query: 208 LAPAEDVRGAWRWSNVTKRLWALSTVLTQLPAKG*KWLPPSRKIHIKKWNIR 53
L P D G W S + + +A+S +L Q P KW P R+ ++ + ++R
Sbjct: 257 LNPVHDALGLWLTSVICEIWFAVSWILDQFP----KWFPIERETYLDRLSLR 304
>At4g39350.1 68417.m05570 cellulose synthase, catalytic subunit
(Ath-A) identical to gi:2827141
Length = 1084
Score = 31.5 bits (68), Expect = 0.77
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -2
Query: 208 LAPAEDVRGAWRWSNVTKRLWALSTVLTQLPAKG*KWLPPSRKIHIKKWNIR 53
L P D G W S + + +A+S +L Q P KW P R+ ++ + ++R
Sbjct: 296 LHPVNDAYGLWLTSVICEIWFAVSWILDQFP----KWYPIERETYLDRLSLR 343
>At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit,
putative similar to gi:2827141 cellulose synthase
catalytic subunit, Arabidopsis thaliana (Ath-A)
Length = 1088
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -2
Query: 208 LAPAEDVRGAWRWSNVTKRLWALSTVLTQLPAKG*KWLPPSRKIHIKKWNIR 53
L P D G W S + + +A+S +L Q P KW P R+ ++ + ++R
Sbjct: 301 LHPVNDAFGLWLTSVICEIWFAVSWILDQFP----KWYPIERETYLDRLSLR 348
>At5g45460.1 68418.m05585 expressed protein
Length = 703
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 220 LSPKLAPAEDVRGAWRWSNVTKR 152
+SP LA DVRG W W + +R
Sbjct: 676 VSPDLATQSDVRGCWNWEDQIQR 698
>At1g53990.1 68414.m06151 GDSL-motif lipase/hydrolase family protein
similar to myrosinase-associated proteins from [Brassica
napus] GI:1769968 GI:1769970, SP|P40603 Anther-specific
proline-rich protein APG {Brassica napus}; contains Pfam
profile PF00657: GDSL-like Lipase/Acylhydrolase
Length = 367
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 48 SNRIFHFFM*IFREGGN-HFYPFAGNCVRTVDNAQRRFVTF 167
+ R+F + +F G N +FYPF+ N N++ +FV F
Sbjct: 150 TKRVFSRAVYLFHIGANDYFYPFSANSSTFKSNSKEKFVDF 190
>At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit
(IRX1) nearly identical to gi:12836997
Length = 985
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -2
Query: 202 PAEDVRGAWRWSNVTKRLWALSTVLTQLPAKG*KWLPPSRKIHIKKWNIR 53
P + G W S + + +A+S VL Q P KW P +R+ +I + + R
Sbjct: 205 PVDSAYGLWLTSVICEIWFAVSWVLDQFP----KWSPINRETYIDRLSAR 250
>At3g54950.1 68416.m06092 patatin-related low similarity to patatin
[GI:169500][Solanum tuberosum]; contains Patatin domain
PF01734
Length = 488
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 307 RSPGGWRSGTCSRWHLCKEALQKLGAWDTLSPKLAPAEDVRGA 179
R+ G SGT + KE+ +L DTL P L P D++ +
Sbjct: 194 RTGSGCCSGTAKLKKVMKESFSELTLKDTLKPVLIPCYDLKSS 236
>At2g41190.1 68415.m05087 amino acid transporter family protein low
similarity to vesicular GABA transporter [Rattus
norvegicus] GI:2587061; belongs to INTERPRO:IPR002422
amino acid/polyamine transporter, family II
Length = 536
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 189 TSSAGASFGESVSHAPSFCSASLHKCQREH----VPDRQPPGDRHSAVKSSW 332
T +A FG S+ PSF AS E +P+R D+ SA +S+W
Sbjct: 79 TIAASPIFGSLRSNPPSFYRASRSNLDVESKAPLLPERHDDSDKASATQSAW 130
>At4g39470.1 68417.m05584 chloroplast lumen common family protein
Length = 341
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 355 RFHHRQQNQLDFT-AEWRSPGGWRSGTCSRWHLCKEALQKLGAWDTLSPKL 206
+FHHR++ L FT R+P G++ RW + +L D +P L
Sbjct: 14 KFHHRREQSLIFTPTHLRNPNGFQ----FRWRKSRPFAPRLAQPDNFAPPL 60
>At3g56310.2 68416.m06260 alpha-galactosidase, putative / melibiase,
putative / alpha-D-galactoside galactohydrolase,
putative similar to alpha-galactosidase SP:Q42656 from
[Coffea arabica]
Length = 413
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/52 (23%), Positives = 21/52 (40%)
Frame = -2
Query: 310 WRSPGGWRSGTCSRWHLCKEALQKLGAWDTLSPKLAPAEDVRGAWRWSNVTK 155
W P + W+ C E +WD + + + VR W+ +VT+
Sbjct: 332 WSGPLSGDRMVVALWNRCSEPATITASWDMIGLESTISVSVRDLWQHKDVTE 383
>At3g56310.1 68416.m06259 alpha-galactosidase, putative / melibiase,
putative / alpha-D-galactoside galactohydrolase,
putative similar to alpha-galactosidase SP:Q42656 from
[Coffea arabica]
Length = 437
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/52 (23%), Positives = 21/52 (40%)
Frame = -2
Query: 310 WRSPGGWRSGTCSRWHLCKEALQKLGAWDTLSPKLAPAEDVRGAWRWSNVTK 155
W P + W+ C E +WD + + + VR W+ +VT+
Sbjct: 356 WSGPLSGDRMVVALWNRCSEPATITASWDMIGLESTISVSVRDLWQHKDVTE 407
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,314,387
Number of Sequences: 28952
Number of extensions: 526998
Number of successful extensions: 1329
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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