Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0596.Seq
         (894 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54174| Best HMM Match : EGF (HMM E-Value=0.21)                      31   0.95 
SB_52991| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_38574| Best HMM Match : WW (HMM E-Value=4.9)                        30   2.2  
SB_23846| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_25962| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_3700| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  

>SB_54174| Best HMM Match : EGF (HMM E-Value=0.21)
          Length = 658

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +2

Query: 710 GRSL--SYXLVNFPKLNRRRQGAXRXPIKALKPEGPIF*EIXXRNFPLHXXTVI 865
           GRS   S  L N P L+ RR  A R  +  +KP+ P+F  I  R       T I
Sbjct: 404 GRSYEGSLTLANLPTLHERRNIACRRFVSRIKPQNPLFPIIKGRRITHDSGTTI 457


>SB_52991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 820

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 710 GRSL--SYXLVNFPKLNRRRQGAXRXPIKALKPEGPIF 817
           GRS   S  L N P L+ RR  A +  +  +KPE P+F
Sbjct: 533 GRSYEGSLTLANLPTLHERRNIACQRFVSRIKPENPLF 570


>SB_38574| Best HMM Match : WW (HMM E-Value=4.9)
          Length = 256

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 710 GRSL--SYXLVNFPKLNRRRQGAXRXPIKALKPEGPIF 817
           GRS   S  L N P L+ RR  A +  +  +KPE P+F
Sbjct: 175 GRSYEGSLTLANLPTLHERRNIACQRFVSRIKPENPLF 212


>SB_23846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 722 SYXLVNFPKLNRRRQGAXRXPIKALKPEGPIF 817
           S  L N P L+ RR  A +  +  +KPE P+F
Sbjct: 108 SLTLANLPTLHERRNIACQRFVSRIKPENPLF 139


>SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1077

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 722  SYXLVNFPKLNRRRQGAXRXPIKALKPEGPIF 817
            S  L N P L+ RR  A +  +  +KPE P+F
Sbjct: 1030 SLTLANLPTLHERRNIACQRFVSRIKPENPLF 1061


>SB_25962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 731 LVNFPKLNRRRQGAXRXPIKALKPEGPIF 817
           L N P L+ RR  A +  +  +KPE P+F
Sbjct: 257 LANLPMLHERRNIACQRFVSRIKPENPLF 285


>SB_3700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +1

Query: 136 KLLLTEKQFIEIKTVFP*PLRRYLTVSEFQNYLPRIGHEIQIKLLLTEKQFIEIKT 303
           + L ++   +  +T+   PLR    VS+ +  L   G E Q+ LLL+   FI IK+
Sbjct: 340 RCLFSDSDLLSNRTLTT-PLRDGTKVSKAEGILHEDGLEDQLSLLLSRTSFIPIKS 394


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,643,776
Number of Sequences: 59808
Number of extensions: 310113
Number of successful extensions: 399
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)