Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0595.Seq
         (873 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    26   0.34 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.1  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    23   4.1  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    23   4.1  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   9.6  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +2

Query: 620 AGEVLHQQNTLRLSVVTTERHFSNIIFYFANTFRHXGFFALKSVQFFKIYKLY 778
           AGE++HQ  T    ++     FS  I      F   GFF +     F + K Y
Sbjct: 311 AGELIHQIQTEDHDIIDEIEMFSLQIANEQVEFNAAGFFPINYTLVFSVLKQY 363



 Score = 23.4 bits (48), Expect = 2.4
 Identities = 16/68 (23%), Positives = 30/68 (44%)
 Frame = +2

Query: 602  FGKRNWAGEVLHQQNTLRLSVVTTERHFSNIIFYFANTFRHXGFFALKSVQFFKIYKLYA 781
            F K + +GE++H+  T    ++     FS  I      F   GFF    + +  ++  + 
Sbjct: 1035 FYKVSKSGELIHKIETNEHEIIDKIEMFSLQILNERAEFNAAGFF---PIDYTLVFSKFT 1091

Query: 782  GSIXVSLV 805
             SI + L+
Sbjct: 1092 SSIRMLLI 1099


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 405 CRSLRRRLP*TTCAEP 358
           CRS++   P  TC EP
Sbjct: 82  CRSIKNECPEPTCDEP 97


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = +2

Query: 620 AGEVLHQQNTLRLSVVTTERHFSNIIFYFANTFRHXGFFALKSVQFFKI 766
           AGE++HQ  T    ++     FS  I      F   GFF +     F +
Sbjct: 342 AGELIHQIQTEDHDIIDEIEMFSLQIANEQVEFNAAGFFPINYTLVFSV 390


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = +2

Query: 602 FGKRNWAGEVLHQQNTLRLSVVTTERHFSNIIFYFANTFRHXGFFALKSVQFFKI 766
           F K + +GE++H+  T    ++     FS  I      F   GFF +     F +
Sbjct: 316 FYKVSKSGELIHKIETNEHEIIDKIEMFSLQILNERAEFNAAGFFPIDYTLVFSV 370


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +1

Query: 634 SSAEHSATFGCHH*ATFLQHNILFRKYFSTYXLFRIKKCT 753
           +  EH      H+  T++ +NI+F    +T+ L  +   T
Sbjct: 177 TGVEHFFKKQFHYIFTYMPYNIVFGLCLTTFGLLPVNGVT 216


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,847
Number of Sequences: 336
Number of extensions: 4667
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24099889
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)