Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0595.Seq
(873 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 31 0.28
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 29 0.86
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 29 1.1
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 28 1.5
SPAC222.03c |tim10||Tim9-Tim10 complex subunit Tim10|Schizosacch... 28 1.5
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster... 28 1.5
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac... 27 3.5
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz... 27 4.6
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 26 8.1
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 30.7 bits (66), Expect = 0.28
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +2
Query: 632 LHQQNTLRLSVVTTERHFSNIIFYFANTFRHXGFFALKSVQFF-KIYKLYAGSIXVSLVI 808
L Q NT+ + +T H + + YF + G+ V+ + I L+A + + LV+
Sbjct: 230 LEQMNTIEMQSITAMAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTI-LVL 288
Query: 809 FPINTVK 829
I+ ++
Sbjct: 289 NKIDAMR 295
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 29.1 bits (62), Expect = 0.86
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Frame = +2
Query: 620 AGEVLHQQNTLRLSVVTTERHF--SNIIFYFANTFRHXGFFALKSVQFFKIY--KLYAGS 787
A E+L +Q +R T HF S + FY F + FF + F Y AGS
Sbjct: 623 AAEILLRQRGIRTLPETVRNHFYRSTMFFYMTYVFHYLPFFIMGRQLFLHHYLPAHLAGS 682
Query: 788 IXVSLVI 808
+ V I
Sbjct: 683 LLVGAFI 689
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 249 GNEIMVDVGGVEVWYFKLEHRYLVLR 172
G+E++V G EVW+F +E R +V R
Sbjct: 361 GSEMLVLSYGAEVWHFNVEQRSVVRR 386
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = -1
Query: 825 TVFMGKITSDTXMDPAYNLYILKNCTLFNAKKPICRKVFAK*NIMLEK 682
T F+GK++S + +DP NL LF+ KPI + V + ++ +K
Sbjct: 13 TSFVGKLSSSSNVDPTLNL-------LFSQSKPIPKPVAKETTVLTKK 53
>SPAC222.03c |tim10||Tim9-Tim10 complex subunit
Tim10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 255 HDKCRVSEFYDNVRTLKTVLTVD-CPWLNFESNRTLAQHM 371
H KC ++Y+ T + +D C FE+N++L+QHM
Sbjct: 40 HKKCISPKYYEADLTKGESVCIDRCVSKYFEANQSLSQHM 79
>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 28.3 bits (60), Expect = 1.5
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +2
Query: 575 LHIYEREHIFGKRNWAGEVLHQQNTLRLSVVTTERHFSNIIFYFANTFRHXGFFALKSVQ 754
L IY+ H + + ++ L L ++ E FSNI + H + LK+V
Sbjct: 352 LEIYKAIHTSTVNEFVNSIQFYESQLSLVLMEIESKFSNI----DGSDIHFRYLFLKTV- 406
Query: 755 FFKIYK-LYAGSIXVSLVIFP 814
F+ + K LY G I VS + P
Sbjct: 407 FWTVRKNLYQGFITVSRTLVP 427
>SPAC1610.04 |mug99||meiotically upregulated gene
Mug99|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -3
Query: 724 MSKSICEIEYYVGEMSLSGDNRKSQSVLLMKDLAS 620
+ KS E+ + +GE+S +GD+ K+ L MKD +
Sbjct: 345 LQKSKLELSFILGELSKNGDD-KNNFELAMKDFGT 378
>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 375
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = +2
Query: 674 ERHFSNIIFYFANTFRHXGFFALKSVQFF 760
++ FS+++FY ++H G LK++ +
Sbjct: 284 QQAFSHMVFYHPQVYKHVGVVPLKAINAY 312
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -3
Query: 595 LSLVNVQQGQIFRQPLRCALVIRVNVEDGRPPARSANVKA 476
LSL+ + F+ PL ++ +N+ PPA+S V++
Sbjct: 697 LSLIAISSVFGFQNPLNAMQILWINILMDGPPAQSLGVES 736
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,520,741
Number of Sequences: 5004
Number of extensions: 74779
Number of successful extensions: 215
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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