Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0595.Seq
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1343 - 29463880-29464054,29464460-29464611,29464734-294648...    31   0.91 
01_01_1003 - 7939376-7939414,7939464-7939568,7939757-7939872,794...    30   2.1  
01_06_1564 - 38276207-38276434,38276571-38276707,38277214-382776...    30   2.8  
08_01_0876 - 8598664-8599374                                           29   3.7  

>06_03_1343 -
           29463880-29464054,29464460-29464611,29464734-29464889,
           29465010-29465316,29465411-29465527,29465600-29465934
          Length = 413

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 236 WST*VALKYGISNWNTGISYCEGICPLPGIHFEIAA 129
           W T   L+YG+  WN G+    G C L G +  I A
Sbjct: 219 WLTSAMLQYGLETWNLGVICLIGNCFLMGAYLVIQA 254


>01_01_1003 -
           7939376-7939414,7939464-7939568,7939757-7939872,
           7941494-7942760
          Length = 508

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 269 TAFVVLRVMRLWST*VALKYGISNWNTGISYCE 171
           + F+  R  R W+   AL  GISNW+  I+  E
Sbjct: 403 SCFIANRFTRAWTLPRALSSGISNWSNAINLAE 435


>01_06_1564 -
           38276207-38276434,38276571-38276707,38277214-38277621,
           38277895-38278256,38278427-38278524,38278727-38278863,
           38279346-38279444,38279753-38280053
          Length = 589

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 210 ILQRHLRRP*SHYP*HDKCRVSEFYDN--VRTLKTVLTV 320
           +L RH RR   +   H  C+V+ F DN  V+ LK + T+
Sbjct: 209 VLDRHFRRDFKYLEKHIACKVAVFQDNLVVQPLKIIRTI 247


>08_01_0876 - 8598664-8599374
          Length = 236

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
 Frame = +2

Query: 80  STGPATWTITNASPT---TWPRSRNVSRAEGRSPR----STRYRC 193
           ++GP  WT+  A+P    T P+SR   R   RSPR    + R RC
Sbjct: 152 ASGPRRWTMDGAAPLLPETSPKSRRGRRGGRRSPRRGPRTRRRRC 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,460,909
Number of Sequences: 37544
Number of extensions: 511850
Number of successful extensions: 1211
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)