Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0595.Seq
         (873 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47759| Best HMM Match : ASC (HMM E-Value=1.49939e-42)               31   0.93 
SB_10606| Best HMM Match : I-set (HMM E-Value=0)                       30   2.1  
SB_32931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.1)            29   6.6  

>SB_47759| Best HMM Match : ASC (HMM E-Value=1.49939e-42)
          Length = 464

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 26/79 (32%), Positives = 35/79 (44%)
 Frame = +3

Query: 288 NVRTLKTVLTVDCPWLNFESNRTLAQHMSFKEDVVLSFYINGSYPLIRLTTVFDKGNNFD 467
           NV TL+++ T    W N       A   SFKE +VL  Y  G YP   +    ++ NN  
Sbjct: 159 NVTTLRSLYTKS--WSNVPEQFIKAYSASFKETIVLCRY--GLYP-CNMKLFTEQVNNIG 213

Query: 468 LCSAFTFADLAGGLPSSTL 524
            C  F+F +  G    S L
Sbjct: 214 RC--FSFNNFVGDKKESLL 230


>SB_10606| Best HMM Match : I-set (HMM E-Value=0)
          Length = 872

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 117 DAFVIVQVAGPVDRTRRPCRSQNCH 43
           D  +++Q A PVDR R  C ++N H
Sbjct: 614 DGSIVIQKASPVDRGRYTCTARNSH 638



 Score = 28.7 bits (61), Expect = 6.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 108 VIVQVAGPVDRTRRPCRSQNCH 43
           +++Q A PVDR R  C ++N H
Sbjct: 838 IVIQKASPVDRGRYTCTARNSH 859


>SB_32931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.1)
          Length = 815

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 828 LTVFMGKITSDTXMDPAYNLYILKNCTLF 742
           L +F+G  TSD  + PA +  + K CTLF
Sbjct: 758 LYMFLGVPTSDKTLSPAKSRNLNKECTLF 786


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,170,412
Number of Sequences: 59808
Number of extensions: 598680
Number of successful extensions: 1741
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1740
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)