Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0594.Seq
         (823 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52864| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_56293| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  
SB_57163| Best HMM Match : 3HCDH_N (HMM E-Value=2.4)                   28   8.0  
SB_287| Best HMM Match : Pentapeptide (HMM E-Value=0.1)                28   8.0  

>SB_52864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +1

Query: 109 QPVAYFCREAASRCTLRMRPRP 174
           QP  Y CRE   RCT R R  P
Sbjct: 109 QPNGYTCREDTERCTRRTRSTP 130



 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +1

Query: 109 QPVAYFCREAASRCTLRMRPRP 174
           QP  Y CRE   RCT R R  P
Sbjct: 269 QPNGYTCREDTERCTRRTRSMP 290


>SB_56293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 300

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -2

Query: 267 TQKLVNRRTKKTALFPKPFTGLHYVTSVTSQRPRSHSQRTTRGC-FTAKIGDRLHLDRAH 91
           T +L   R     L+  P+T +H  TS  S +  + S R+T  C  TA   D L L R H
Sbjct: 190 TSRLATARACSGELY-NPYTDVHSSTSYLSSQLTAPSARSTASCSVTAANCDPLLLRRHH 248


>SB_57163| Best HMM Match : 3HCDH_N (HMM E-Value=2.4)
          Length = 303

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 238 KDGFISEAIYWITLRNKRDVTKASVSFAAYNA--RLLHGKNRRPVALRS 98
           +DG IS+  + + LR KRD T+       Y A  R L    R+ V LRS
Sbjct: 136 QDGRISDEEFRLILRGKRDTTRLRPLSELYTASHRRLRIYGRKTVILRS 184


>SB_287| Best HMM Match : Pentapeptide (HMM E-Value=0.1)
          Length = 288

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 18/50 (36%), Positives = 21/50 (42%)
 Frame = -2

Query: 195 VTSVTSQRPRSHSQRTTRGCFTAKIGDRLHLDRAHLCK*RFYHTRFYRSH 46
           VT     R R    R TR  FT     R  + R HL + R   TR  R+H
Sbjct: 168 VTRTRFTRTRVTRTRVTRTRFTRTRFTRTRVTRTHLTRTRVTRTRVTRTH 217


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,063,720
Number of Sequences: 59808
Number of extensions: 458502
Number of successful extensions: 816
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)