Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0594.Seq
(823 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC146795-1|AAI46796.1| 1294|Homo sapiens astrotactin 1 protein. 30 8.8
BC142697-1|AAI42698.1| 1216|Homo sapiens astrotactin 1 protein. 30 8.8
AL136983-3|CAH71679.1| 1247|Homo sapiens astrotactin 1 protein. 30 8.8
AL136983-2|CAH71678.1| 1294|Homo sapiens astrotactin 1 protein. 30 8.8
AL136983-1|CAH71677.1| 1228|Homo sapiens astrotactin 1 protein. 30 8.8
AL031290-3|CAI22719.1| 1247|Homo sapiens astrotactin 1 protein. 30 8.8
AL031290-2|CAI22718.1| 1294|Homo sapiens astrotactin 1 protein. 30 8.8
AL031290-1|CAI22717.1| 1228|Homo sapiens astrotactin 1 protein. 30 8.8
AL022145-3|CAI20556.1| 1247|Homo sapiens astrotactin 1 protein. 30 8.8
AL022145-2|CAI20555.1| 1294|Homo sapiens astrotactin 1 protein. 30 8.8
AL022145-1|CAI20554.1| 1228|Homo sapiens astrotactin 1 protein. 30 8.8
AL021398-3|CAI23464.1| 1247|Homo sapiens astrotactin 1 protein. 30 8.8
AL021398-2|CAI23463.1| 1294|Homo sapiens astrotactin 1 protein. 30 8.8
AL021398-1|CAI23462.1| 1228|Homo sapiens astrotactin 1 protein. 30 8.8
AB006627-1|BAA22958.1| 1302|Homo sapiens KIAA0289 protein. 30 8.8
>BC146795-1|AAI46796.1| 1294|Homo sapiens astrotactin 1 protein.
Length = 1294
Score = 30.3 bits (65), Expect = 8.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 54 DKSGCDKNVTCISARDLSATG 116
D GC KN CIS R L +TG
Sbjct: 607 DNGGCSKNFRCISDRKLDSTG 627
>BC142697-1|AAI42698.1| 1216|Homo sapiens astrotactin 1 protein.
Length = 1216
Score = 30.3 bits (65), Expect = 8.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 54 DKSGCDKNVTCISARDLSATG 116
D GC KN CIS R L +TG
Sbjct: 607 DNGGCSKNFRCISDRKLDSTG 627
>AL136983-3|CAH71679.1| 1247|Homo sapiens astrotactin 1 protein.
Length = 1247
Score = 30.3 bits (65), Expect = 8.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 54 DKSGCDKNVTCISARDLSATG 116
D GC KN CIS R L +TG
Sbjct: 560 DNGGCSKNFRCISDRKLDSTG 580
>AL136983-2|CAH71678.1| 1294|Homo sapiens astrotactin 1 protein.
Length = 1294
Score = 30.3 bits (65), Expect = 8.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 54 DKSGCDKNVTCISARDLSATG 116
D GC KN CIS R L +TG
Sbjct: 607 DNGGCSKNFRCISDRKLDSTG 627
>AL136983-1|CAH71677.1| 1228|Homo sapiens astrotactin 1 protein.
Length = 1228
Score = 30.3 bits (65), Expect = 8.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 54 DKSGCDKNVTCISARDLSATG 116
D GC KN CIS R L +TG
Sbjct: 607 DNGGCSKNFRCISDRKLDSTG 627
>AL031290-3|CAI22719.1| 1247|Homo sapiens astrotactin 1 protein.
Length = 1247
Score = 30.3 bits (65), Expect = 8.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 54 DKSGCDKNVTCISARDLSATG 116
D GC KN CIS R L +TG
Sbjct: 560 DNGGCSKNFRCISDRKLDSTG 580
>AL031290-2|CAI22718.1| 1294|Homo sapiens astrotactin 1 protein.
Length = 1294
Score = 30.3 bits (65), Expect = 8.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 54 DKSGCDKNVTCISARDLSATG 116
D GC KN CIS R L +TG
Sbjct: 607 DNGGCSKNFRCISDRKLDSTG 627
>AL031290-1|CAI22717.1| 1228|Homo sapiens astrotactin 1 protein.
Length = 1228
Score = 30.3 bits (65), Expect = 8.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 54 DKSGCDKNVTCISARDLSATG 116
D GC KN CIS R L +TG
Sbjct: 607 DNGGCSKNFRCISDRKLDSTG 627
>AL022145-3|CAI20556.1| 1247|Homo sapiens astrotactin 1 protein.
Length = 1247
Score = 30.3 bits (65), Expect = 8.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 54 DKSGCDKNVTCISARDLSATG 116
D GC KN CIS R L +TG
Sbjct: 560 DNGGCSKNFRCISDRKLDSTG 580
>AL022145-2|CAI20555.1| 1294|Homo sapiens astrotactin 1 protein.
Length = 1294
Score = 30.3 bits (65), Expect = 8.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 54 DKSGCDKNVTCISARDLSATG 116
D GC KN CIS R L +TG
Sbjct: 607 DNGGCSKNFRCISDRKLDSTG 627
>AL022145-1|CAI20554.1| 1228|Homo sapiens astrotactin 1 protein.
Length = 1228
Score = 30.3 bits (65), Expect = 8.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 54 DKSGCDKNVTCISARDLSATG 116
D GC KN CIS R L +TG
Sbjct: 607 DNGGCSKNFRCISDRKLDSTG 627
>AL021398-3|CAI23464.1| 1247|Homo sapiens astrotactin 1 protein.
Length = 1247
Score = 30.3 bits (65), Expect = 8.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 54 DKSGCDKNVTCISARDLSATG 116
D GC KN CIS R L +TG
Sbjct: 560 DNGGCSKNFRCISDRKLDSTG 580
>AL021398-2|CAI23463.1| 1294|Homo sapiens astrotactin 1 protein.
Length = 1294
Score = 30.3 bits (65), Expect = 8.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 54 DKSGCDKNVTCISARDLSATG 116
D GC KN CIS R L +TG
Sbjct: 607 DNGGCSKNFRCISDRKLDSTG 627
>AL021398-1|CAI23462.1| 1228|Homo sapiens astrotactin 1 protein.
Length = 1228
Score = 30.3 bits (65), Expect = 8.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 54 DKSGCDKNVTCISARDLSATG 116
D GC KN CIS R L +TG
Sbjct: 607 DNGGCSKNFRCISDRKLDSTG 627
>AB006627-1|BAA22958.1| 1302|Homo sapiens KIAA0289 protein.
Length = 1302
Score = 30.3 bits (65), Expect = 8.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 54 DKSGCDKNVTCISARDLSATG 116
D GC KN CIS R L +TG
Sbjct: 615 DNGGCSKNFRCISDRKLDSTG 635
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,237,228
Number of Sequences: 237096
Number of extensions: 2079179
Number of successful extensions: 4126
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4126
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10259383312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -