Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0593.Seq
         (867 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           30   2.1  
05_06_0042 - 25131962-25132149,25132261-25132345,25132750-251327...    29   6.4  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 349 ITIHWPSFYNVV-TGKTLALPNLIALQH 429
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>05_06_0042 -
           25131962-25132149,25132261-25132345,25132750-25132797,
           25133084-25133197,25133279-25133410,25134029-25134124,
           25134771-25135005,25135054-25135322,25135408-25135491,
           25136529-25136703,25138018-25138229
          Length = 545

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = -3

Query: 322 TGPPLFLSKKKTINK*NVFYVNFETVNDDE----RDTSERSRKNARTRLSVTFG 173
           +GP   +   K  N     Y NFE VNDDE     +  ++S K+ R  +   FG
Sbjct: 450 SGPWRKMLPSKDANFVGYTYKNFEIVNDDEVAGIAELKKKSSKSKRPTIKTLFG 503


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,469,869
Number of Sequences: 37544
Number of extensions: 448072
Number of successful extensions: 945
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)