Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0593.Seq
         (867 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.90 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   8.4  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 55  FICLLLYILRFEISNIIIFMYKMRNARAH 141
           F C++  +    +S I+I  Y  RNA  H
Sbjct: 298 FNCIMFMVASSVVSTILILNYHHRNADTH 326


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -2

Query: 590 AYWLKNELI*QKFNANFNKILTLTICHCHSXAQL 489
           ++W+K E    +       +LTL+  H  S A L
Sbjct: 265 SFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASL 298


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 387 SHDVVKRRPVNCNTTHYRANWVPGPPF 307
           S +  K++P +C+T  YR   V  P F
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTPLF 586


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 677 ISGLLFQTGTTLNPI 633
           +SG L+   TT+NPI
Sbjct: 312 LSGCLYYFSTTINPI 326


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,381
Number of Sequences: 438
Number of extensions: 5043
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)