Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0591.Seq
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    27   4.6  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   4.6  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    26   6.1  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    26   8.1  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   8.1  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   8.1  

>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 802 LPFRVPILVLYGTW 761
           LPFR+ +LV+ GTW
Sbjct: 16  LPFRIGLLVIVGTW 29


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +3

Query: 309 PIRPIVSRITIHWPSFYNVVTGKTLALPNLIALQ-----HIPLSPAGVIAKRPAPIALPN 473
           P  P+ S ++ H   +    +    +L N I+L      ++PLSP    A+ P+PI L +
Sbjct: 172 PRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRLYS 231

Query: 474 SCA 482
           S A
Sbjct: 232 SDA 234


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
 Frame = +2

Query: 611 DRD-RVECCSSLEQESTIKERGTPTSKGRKTVYQGDGPTT*TITPNQXFWGPGAVKH*NR 787
           D D  V CC  L  + T      P    +KTVY      T  + PN   +  G  KH N 
Sbjct: 235 DHDIEVICCGDLLDQVT-----HPKDMRKKTVYFS---VTTPVAPNYIAFAAGPFKHINL 286

Query: 788 NPKREP 805
              REP
Sbjct: 287 TDFREP 292


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 645 NKSPLLKNVGLQRQRGEKPSIRAMGPLREPSPLIK 749
           NK+P+  NVGL  Q G K     + P  + + ++K
Sbjct: 821 NKNPVHGNVGLTNQHGFKTMHHNVNPFTKQNGIMK 855


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 544 VKSAHFLTNRPKSAKSLINQKNRP 615
           VK   FLTN   +  SL+ Q NRP
Sbjct: 675 VKDYDFLTNLNATTLSLLTQSNRP 698


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 491 PFXCATVGKGDRCGPLRYYASWRKGDV 411
           P  C  V  G R GP   Y +W+  DV
Sbjct: 392 PKVCLFVRNGARLGPTSIYHAWKAFDV 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,562,830
Number of Sequences: 5004
Number of extensions: 74915
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)