Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0591.Seq
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0564 - 4176177-4178096                                           34   0.13 
09_02_0036 + 3217163-3217584,3217752-3218322                           30   2.1  
02_02_0427 + 10120810-10121059,10121102-10121109                       29   4.9  
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75...    29   4.9  
03_05_1134 + 30624373-30624378,30624474-30624592,30624729-306248...    28   8.5  
02_04_0276 + 21491150-21492761,21492891-21492947,21493817-214938...    28   8.5  

>03_01_0564 - 4176177-4178096
          Length = 639

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -3

Query: 304 RAPPQCLSTGFVNLFAYSYCRC 239
           RA PQC S GFV+   + YCRC
Sbjct: 102 RAHPQCSSGGFVDYLGFFYCRC 123


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 333 ITIHWPSFYNVV-TGKTLALPNLIALQH 413
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>02_02_0427 + 10120810-10121059,10121102-10121109
          Length = 85

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 573 AEIGK-IPYKSK-E*TEIGLSVVPVWNKSPLLKNVGLQRQRGEKPSIRA 713
           AE+G  +P  S    TE+ +  VP W + PLL   G  R+     S+ A
Sbjct: 3   AEVGDGVPSSSPASTTEVAVKAVPWWRRLPLLSGCGTGRKAVRAASVAA 51


>02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-751889,
            752025-753905,754093-754296,754807-754899,755036-755122,
            755241-755328,755533-755645,755943-757259,757398-758672,
            759166-759273
          Length = 2233

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +2

Query: 677  PTSKGRKTVYQGDGPTT*TITPNQXFWGPGAVKH*NRNPKREPPI*KLXRGKPAKXWREK 856
            P+ +G +T +Q D P     + +   WG  +V+  +R     P I  +   KP K  R  
Sbjct: 2166 PSPRGARTPFQRD-PHPSQQSMHSAGWGAHSVQQSDRGGSSSPGIGDIQWAKPTKRSRTD 2224

Query: 857  EGKK 868
             GK+
Sbjct: 2225 SGKR 2228


>03_05_1134 +
           30624373-30624378,30624474-30624592,30624729-30624807,
           30625784-30625858,30625954-30626028,30626314-30626651,
           30626881-30627004,30627070-30627093
          Length = 279

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 151 ILRITQTRDYIRISITDRTLGIVIT*FSVTRSAGNPQGDTP 29
           ++ IT   DYI I +TD+ L +      VT +A N   D P
Sbjct: 76  VVNITPAEDYIYIPVTDQQLVVSEVVGEVTSTAPNADLDQP 116


>02_04_0276 +
           21491150-21492761,21492891-21492947,21493817-21493870,
           21493994-21494022
          Length = 583

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = -1

Query: 474 CWEGRSVRASSLLRQLAKGGCAARRLSW--VTPGFSQSRRCKTTASEL*YDSL*GELG-T 304
           C EGR   A   L+ L   GC    +S+  V  G   + R +        + L GE+G  
Sbjct: 239 CQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDA------EELMGEMGQK 292

Query: 303 GPPPNVCQLVLLI 265
           G PPNV    +LI
Sbjct: 293 GCPPNVVTFNMLI 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,164,455
Number of Sequences: 37544
Number of extensions: 523539
Number of successful extensions: 1110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)