Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0591.Seq
         (873 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   8.5  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   8.5  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   8.5  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -2

Query: 335 NTTHYRANWVPGPPPMFVNW 276
           ++ H+ A ++P  PP  + W
Sbjct: 4   DSIHWEARYLPAGPPRLLGW 23


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 371 SHDVVKRRPVNCNTTHYRANWVPGP 297
           S +  K++P +C+T  YR   V  P
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTP 584


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 319 GRIGYRAPPQCLSTGFVNL 263
           G IG+R P  CL    VNL
Sbjct: 522 GVIGHRMPRYCLFGNTVNL 540


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 684 DVGVPRSLIVDSCSKLEQHSTLSRSILL 601
           ++G P   I++SC + E H+     I L
Sbjct: 513 EMGTPLENILESCQQDETHAPEKTKIFL 540


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 319 GRIGYRAPPQCLSTGFVNL 263
           G IG+R P  CL    VNL
Sbjct: 522 GVIGHRMPRYCLFGNTVNL 540


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,637
Number of Sequences: 438
Number of extensions: 6138
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)