Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0591.Seq
         (873 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03080.1 68414.m00282 kinase interacting family protein simil...    29   4.1  
At5g24280.1 68418.m02856 expressed protein ; expression supporte...    28   9.4  
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica...    28   9.4  
At1g69870.1 68414.m08041 proton-dependent oligopeptide transport...    28   9.4  

>At1g03080.1 68414.m00282 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1744

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 599  IKRIDRDRVECCSSLEQESTIKERGTPTSKGR 694
            ++ +  + VE C +LE  ST+K+R     KGR
Sbjct: 1340 LEGLTNELVEACKNLESRSTLKDREIEQLKGR 1371


>At5g24280.1 68418.m02856 expressed protein ; expression supported
           by MPSS
          Length = 1634

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -1

Query: 693 RPFDVGVPRSLIVDSCSKLEQHSTLSRSILLIYKGFC 583
           RP + G   S I+D  SKLE  S+LS  I +I  G C
Sbjct: 681 RPENEGCKLS-IIDGISKLEVQSSLSLPITIIDSGKC 716


>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|Q03468 Excision
           repair protein ERCC-6 (Cockayne syndrome protein CSB)
           {Homo sapiens}; contains PFam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1187

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 318 PIVSRITIHWPSFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCA 482
           PI +++T  W  F  V  GK   LP   A   +P++  G     P  ++    CA
Sbjct: 576 PIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCA 630


>At1g69870.1 68414.m08041 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 620

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = -3

Query: 616 SVYSFDL*GILPISAYWLKNELI*QKFNANFNKILTLQFAIRHSXAQLLGRAIGAGLFAI 437
           S+ + D  G+ P+S +WL  +LI       FN I  ++F        +  R+I   LF++
Sbjct: 471 SINAGDPTGMTPMSVFWLSPQLILMGLCEAFNIIGQIEFFNSQFPEHM--RSIANSLFSL 528

Query: 436 TPAG 425
           + AG
Sbjct: 529 SFAG 532


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,039,687
Number of Sequences: 28952
Number of extensions: 406209
Number of successful extensions: 786
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)