Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0590.Seq
         (851 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0144 + 14826797-14827435,14827561-14827771,14827861-148281...    28   8.2  

>03_03_0144 +
           14826797-14827435,14827561-14827771,14827861-14828155,
           14828285-14828674,14829131-14829208,14829296-14829518
          Length = 611

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 474 VAISRSVNGDSECPMTKTEMKFDVCQKKYSN 566
           +AI R    D  CPM +   K D C+  Y N
Sbjct: 349 IAIWRKRINDKSCPMKQENPKVDKCELAYDN 379


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,323,585
Number of Sequences: 37544
Number of extensions: 275234
Number of successful extensions: 383
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)