Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0590.Seq
         (851 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04700.1 68418.m00478 hypothetical protein                          29   3.0  
At5g45640.1 68418.m05612 subtilase family protein contains Pfam ...    28   6.9  

>At5g04700.1 68418.m00478 hypothetical protein
          Length = 669

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
 Frame = -2

Query: 286 LLE-SSFHGALSINLAALRLSXVRQRQLYTNSRVNISLELDGYY---ISLSLVFSSLVQK 119
           LLE    +G + + +A         R LYT + V + L+ DGY+   + L+ +F  ++  
Sbjct: 178 LLEIPGINGQIPVVVAVENTQMEMARYLYTRTPVQVLLDQDGYHGSLLFLNAIFYKMLDI 237

Query: 118 NVDKSGIQSTL**TKH 71
            +D   +   L  TKH
Sbjct: 238 ALDLFNMSRRLAVTKH 253


>At5g45640.1 68418.m05612 subtilase family protein contains Pfam
           domain, PF00082: Subtilase family; contains Pfam domain,
           PF02225: protease associated (PA) domain
          Length = 754

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -2

Query: 208 LYTNSRVNISLELDGYYISLSLVFSSLVQKNVD 110
           +  NSR N + +++ +++  +LVFSS V + +D
Sbjct: 428 ILANSRDNDAFDVESHFVPTALVFSSTVDRILD 460


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,326,419
Number of Sequences: 28952
Number of extensions: 236918
Number of successful extensions: 362
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)