Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0583.Seq
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom...    28   1.9  
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    27   2.5  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    26   7.8  

>SPBC19C2.02 |pmt1||DNA methyltransferase
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 330

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 213 NSYGLPRDRLKSTTNGSRCITKREVHVXSGR*TFTYRADGERTHE 79
           N +G   D +K  ++   C T+   H+  G  +    +D E THE
Sbjct: 219 NKWGHQFDIVKPDSSSCCCFTRGYTHLVQGAGSILQMSDHENTHE 263


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 508 HYRANWVPGPPRVPETVSSQTFKQTRTSPRLHGCDNRRVALASAL 374
           H  A+    PP VP+ + S   K  + +    G + +R+AL   L
Sbjct: 290 HQPASATSSPPSVPQKIPSSNHKSQQANGSDQGNEGKRMALIQQL 334


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = -1

Query: 93  ERTHETNVPSTSERT*TYAREKTMNLSVR 7
           ER  E+++P+ +++   Y ++KT NLS++
Sbjct: 470 ERIIESDLPNNNKQKDRYFKDKTSNLSMK 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,118,956
Number of Sequences: 5004
Number of extensions: 57729
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)