Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0583.Seq
         (849 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           30   2.0  
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398...    29   3.5  
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452...    29   6.2  
07_03_0078 - 13147741-13148913                                         28   8.2  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 514 ITIHWPSFYNVV-TGKTLALPNLIALQH 594
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>12_01_0503 -
           3981603-3981730,3982858-3983023,3983057-3983139,
           3983250-3983301,3983497-3983654,3983756-3985617,
           3986029-3986093,3986176-3986340,3986836-3986893,
           3987479-3987590,3987661-3987712,3988080-3988140,
           3988220-3988377,3988705-3988787,3988897-3988945,
           3989122-3989185,3990225-3990317,3990410-3990543,
           3991364-3991585,3991815-3991937,3992103-3992267,
           3993064-3993450
          Length = 1479

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 395 ASVVAAVQSRTSACLFERLR*YSFGHSGGARYPIRPIVVVLQFTGR 532
           A VV   Q+   + L E L  + F H GG     RP+ + L+F  R
Sbjct: 49  AVVVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPVALHLRFNPR 94


>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
            4521632-4521723,4522226-4522342,4522641-4522704,
            4523175-4523228,4523579-4523666,4523788-4524023,
            4525258-4525478,4525634-4525827,4525938-4525995,
            4526771-4526824,4526851-4527473,4527580-4527640,
            4528417-4528590,4528803-4529063,4529201-4529320,
            4529388-4530022,4530062-4530828,4530915-4531012,
            4531101-4531155,4531230-4531318
          Length = 2010

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 330  PARRKSTSYFLVSCLSADASATRLLSQPCSLGLVRVCLNVCD 455
            P RRK  S  L       +S    LSQ C+ G++ + L++CD
Sbjct: 1319 PNRRKGESQELKQINPLHSSHLHALSQACAPGVILMPLDLCD 1360


>07_03_0078 - 13147741-13148913
          Length = 390

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 552 SHDVVKRRPVNCNTTTIGRIGYRAPPECPKLYHR 451
           SH  VKR PV+    T+G I    PP C   +HR
Sbjct: 24  SHAAVKRSPVDKPPFTLGDIRKAIPPHC---FHR 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,524,574
Number of Sequences: 37544
Number of extensions: 391444
Number of successful extensions: 866
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)