Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0583.Seq
         (849 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052096-1|AAK93520.1|  574|Drosophila melanogaster SD04526p pro...    29   8.1  
AE014296-3703|AAN12199.1|  574|Drosophila melanogaster CG32452-P...    29   8.1  
AE014296-3702|AAN12198.1|  574|Drosophila melanogaster CG32452-P...    29   8.1  

>AY052096-1|AAK93520.1|  574|Drosophila melanogaster SD04526p
           protein.
          Length = 574

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = -2

Query: 209 RTVSRAIVLNPRRTGRDALLREKCTSXRDVKRSRTVPTENERTKRTFRQHLNARKRTPER 30
           R+VSR+ +  PR  GR    R +  S  + K+  + PT   R+  + R+H+ +RKR   R
Sbjct: 210 RSVSRSHI--PRCRGRR---RSQSRSPTEPKQRSSPPTHKRRSSPS-REHIRSRKRCYSR 263

Query: 29  KR 24
            R
Sbjct: 264 DR 265


>AE014296-3703|AAN12199.1|  574|Drosophila melanogaster CG32452-PB,
           isoform B protein.
          Length = 574

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = -2

Query: 209 RTVSRAIVLNPRRTGRDALLREKCTSXRDVKRSRTVPTENERTKRTFRQHLNARKRTPER 30
           R+VSR+ +  PR  GR    R +  S  + K+  + PT   R+  + R+H+ +RKR   R
Sbjct: 210 RSVSRSHI--PRCRGRR---RSQSRSPTEPKQRSSPPTHKRRSSPS-REHIRSRKRCYSR 263

Query: 29  KR 24
            R
Sbjct: 264 DR 265


>AE014296-3702|AAN12198.1|  574|Drosophila melanogaster CG32452-PA,
           isoform A protein.
          Length = 574

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = -2

Query: 209 RTVSRAIVLNPRRTGRDALLREKCTSXRDVKRSRTVPTENERTKRTFRQHLNARKRTPER 30
           R+VSR+ +  PR  GR    R +  S  + K+  + PT   R+  + R+H+ +RKR   R
Sbjct: 210 RSVSRSHI--PRCRGRR---RSQSRSPTEPKQRSSPPTHKRRSSPS-REHIRSRKRCYSR 263

Query: 29  KR 24
            R
Sbjct: 264 DR 265


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,688,419
Number of Sequences: 53049
Number of extensions: 648819
Number of successful extensions: 1659
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1653
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4065385896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)