Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0583.Seq
         (849 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.6  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   6.2  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   6.2  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   6.2  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 487 PGPPRVPETVSSQTFKQTRTSPRLH 413
           PGPP VP        KQT    ++H
Sbjct: 332 PGPPGVPGDHGDHAPKQTEVRFKVH 356


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 487 PGPPRVPETVSSQTFKQTRTSPRLH 413
           PGPP VP        KQT    ++H
Sbjct: 332 PGPPGVPGDHGDHAPKQTEVRFKVH 356


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 362 EKIRR*LASGRTRMRKFFLGIFNACVISL 276
           EK+ + L +    +R+ F+G    C++SL
Sbjct: 414 EKVAKQLVNSVNCLRESFIGTLQRCLLSL 442


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 362 EKIRR*LASGRTRMRKFFLGIFNACVISL 276
           EK+ + L +    +R+ F+G    C++SL
Sbjct: 452 EKVAKQLVNSVNCLRESFIGTLQRCLLSL 480


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 466 ETVSSQTFKQTRTSPRLH 413
           E+VSS+T    R++PR H
Sbjct: 252 ESVSSETNHNERSTPRSH 269


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 466 ETVSSQTFKQTRTSPRLH 413
           E+VSS+T    R++PR H
Sbjct: 252 ESVSSETNHNERSTPRSH 269


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 466 ETVSSQTFKQTRTSPRLH 413
           E+VSS+T    R++PR H
Sbjct: 252 ESVSSETNHNERSTPRSH 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,248
Number of Sequences: 438
Number of extensions: 4669
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)