Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0581.Seq
         (523 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5K2J7 Cluster: Putative uncharacterized protein; n=1; ...    36   0.43 
UniRef50_Q1V2J6 Cluster: Lysine efflux pump; n=2; Candidatus Pel...    33   3.0  
UniRef50_Q7RIR9 Cluster: Var1p, putative; n=3; Plasmodium (Vinck...    33   4.0  
UniRef50_Q22NX0 Cluster: Putative uncharacterized protein; n=1; ...    32   6.9  
UniRef50_Q38EK2 Cluster: Putative uncharacterized protein; n=1; ...    32   9.2  
UniRef50_Q2NGC4 Cluster: Hypothetical membrane-spanning protein;...    32   9.2  

>UniRef50_A5K2J7 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 3000

 Score = 36.3 bits (80), Expect = 0.43
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +2

Query: 11  TKISTLIFRN*VFCINKSF--NFVNVLFVAFSYYYTYFLNSLFHICNSFFTQKI 166
           TK+S L  +N     N+ F   FVNV F  F   Y Y  N   +  NSFF++KI
Sbjct: 824 TKLSNLEIKNKAKLQNEKFFKKFVNVNFAFFFVLYDYLQNKHLYPNNSFFSRKI 877


>UniRef50_Q1V2J6 Cluster: Lysine efflux pump; n=2; Candidatus
           Pelagibacter ubique|Rep: Lysine efflux pump - Candidatus
           Pelagibacter ubique HTCC1002
          Length = 201

 Score = 33.5 bits (73), Expect = 3.0
 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query: 48  FVLISRSTLLMCYL*HF--PTIILTF*IACFIYVTHFLLKKSETK 176
           F+LI     L  YL HF  PTI L F I   I++ HF+  K +TK
Sbjct: 47  FLLIFLGIFLFQYLNHFFTPTIELVFNILLLIFLLHFIWGKIKTK 91


>UniRef50_Q7RIR9 Cluster: Var1p, putative; n=3; Plasmodium
           (Vinckeia)|Rep: Var1p, putative - Plasmodium yoelii
           yoelii
          Length = 464

 Score = 33.1 bits (72), Expect = 4.0
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
 Frame = +2

Query: 17  ISTLIFRN*VFC-INKSFNFVNVLFVAFSYYYTYFLNSLFH-----ICNSFFTQKIRNKI 178
           I  LI  N +FC  +K    VN  ++   YY  Y+LN+LFH     + N++ +    NK 
Sbjct: 204 IINLISNNKLFCDFSKDKISVNPFYI--KYYVKYYLNTLFHLSPKLVINNYSSMLYNNKF 261

Query: 179 P 181
           P
Sbjct: 262 P 262


>UniRef50_Q22NX0 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 556

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 53  INKSFNFVNVLFVAFSYYYTYFLNSLFH 136
           +N S  F+ V+F+ FSYYY  + N+L H
Sbjct: 185 LNNSCPFMMVIFLIFSYYYGSWKNTLIH 212


>UniRef50_Q38EK2 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 113

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 65  FNFVNVLFVAFSYYYTYFLNSLFHICNSFFTQKIRNKIP 181
           F F+   FV F Y++++FL S F  C  F  QK     P
Sbjct: 49  FIFIIFCFVTFFYFFSFFL-SFFPFCFCFVKQKFNTPAP 86


>UniRef50_Q2NGC4 Cluster: Hypothetical membrane-spanning protein;
           n=1; Methanosphaera stadtmanae DSM 3091|Rep:
           Hypothetical membrane-spanning protein - Methanosphaera
           stadtmanae (strain DSM 3091)
          Length = 113

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 47  FCINKSFNFVNVLFVAFSYYYTYFLNSLFHICNSFFTQKI 166
           F +  S +F+N+        ++YF +S   +CN++F   I
Sbjct: 47  FKVGNSISFININISLLYLVFSYFFSSFSRVCNNYFAMLI 86


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 435,245,847
Number of Sequences: 1657284
Number of extensions: 7548110
Number of successful extensions: 14541
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14532
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)