Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0581.Seq
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    29   0.32 
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    26   3.0  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    25   6.8  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   9.0  

>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -1

Query: 259 NIPVYFLFRSYTTVLGLIYKIR 194
           NI    LFR+YTT+LGL+ ++R
Sbjct: 793 NIVAGTLFRNYTTILGLLLRLR 814


>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -1

Query: 337 FTRLIIIPTKLGTNSIT**IESYKQLNIPVYFLFRSYTTVLG 212
           F  L++IPT+LG +SI    ESY    + V F  RS+  + G
Sbjct: 174 FPVLLLIPTRLGIDSIN---ESYYDQLLQV-FEIRSFVGITG 211


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 62  SFNFVNVLFVAFSYYYTYFLNSLF 133
           SFNFVN L   F +   Y L+ +F
Sbjct: 208 SFNFVNSLKQTFIFMQPYLLSHMF 231


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 410  FCTRQFSYLTRFLMNNTYRRIWFLIY 333
            F +RQ+ +L+R L+ +   R+W  +Y
Sbjct: 1424 FHSRQYLFLSRDLVEDLSLRVWEYVY 1449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,983,384
Number of Sequences: 5004
Number of extensions: 37047
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)