Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0581.Seq
         (523 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1184 + 34802749-34802892,34802981-34803220,34803636-348039...    28   5.2  
02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,606...    28   5.2  

>02_05_1184 +
           34802749-34802892,34802981-34803220,34803636-34803950,
           34804030-34804209,34804312-34804504,34805062-34805324,
           34805461-34805590,34805719-34805786,34805951-34806199,
           34806284-34806357,34808052-34808143,34808603-34808685,
           34810337-34810408,34810558-34810683,34810996-34811037
          Length = 756

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 391 ENCRVQNVGFLEGVKIGRCILINHKSFILYNC*LE 495
           ENC+V N    +G  IG+ +LI H S+I  N  +E
Sbjct: 381 ENCKVSNSVIGQGCNIGKNVLI-HGSYIWDNVTIE 414


>02_02_0009 +
           6068260-6068591,6068797-6068917,6069034-6069122,
           6069207-6069291,6069421-6069580,6069667-6069743,
           6069848-6069898,6069979-6070069,6070167-6070468,
           6070549-6070830,6070911-6071388,6071457-6071560,
           6071647-6071809,6071895-6072017,6072099-6072217,
           6072304-6072636,6072713-6073003,6073088-6073171,
           6073260-6073393,6073478-6073705,6073795-6073966,
           6074062-6074316,6074408-6074668
          Length = 1444

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 223 WYNSEIGNILGYLIVYNFQFIKLL 294
           WY   +G +LGY++++N  FI  L
Sbjct: 751 WYWIGVGALLGYIMLFNILFILFL 774


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,515,004
Number of Sequences: 37544
Number of extensions: 169382
Number of successful extensions: 254
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)