Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0581.Seq
         (523 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93383-9|CAB07630.1|  281|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z93379-5|CAB07593.3|  351|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U64609-5|AAB04602.2|  331|Caenorhabditis elegans Serpentine rece...    27   8.1  

>Z93383-9|CAB07630.1|  281|Caenorhabditis elegans Hypothetical
           protein F54B8.10 protein.
          Length = 281

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 251 SIFPISELYHRIRINL*NSYRITAVFCF*FFE 156
           SIFPI  L+H  R  + NS+ +  VFC  FF+
Sbjct: 110 SIFPI--LHHNHRRKIRNSHILLLVFCSAFFD 139


>Z93379-5|CAB07593.3|  351|Caenorhabditis elegans Hypothetical
           protein F21H7.7 protein.
          Length = 351

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 449 F*LITNHLFCITVDLSFTHLA 511
           F L+ NHL C  VDLSF  L+
Sbjct: 65  FPLLINHLSCALVDLSFCSLS 85


>U64609-5|AAB04602.2|  331|Caenorhabditis elegans Serpentine
           receptor, class m protein1 protein.
          Length = 331

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 415 GFLEGVKIGRCILINHKSFILYNC 486
           GF   +K+GR +LI   +F++++C
Sbjct: 85  GFSLPIKLGRAMLITFVTFVIFSC 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,545,178
Number of Sequences: 27780
Number of extensions: 194190
Number of successful extensions: 414
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)