Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0581.Seq
         (523 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   2.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   3.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.4  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 193 YEFYRLILIRWYNSEIGNIL 252
           + +  L +IRW ++EIG  L
Sbjct: 53  FRYLELAMIRWKDTEIGLFL 72


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +3

Query: 45  FFVLISRSTLLMCYL*HFPTIILTF*IACFIYV 143
           F+++I R TL        PT++++F      Y+
Sbjct: 225 FYIIIRRKTLFYTVNLILPTVLISFLCVLVFYL 257


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +3

Query: 183 RNTVRIL*INPNTVV*LRNRKYTGIFN 263
           R  +R+L +N + +  ++NR + G+ N
Sbjct: 817 RKNMRVLYVNGSGIESIQNRTFNGLNN 843


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,767
Number of Sequences: 438
Number of extensions: 2681
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)