Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0581.Seq
         (523 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57800.1 68418.m07228 CER1 protein, putative (WAX2) similar t...    27   7.7  
At4g31980.1 68417.m04547 expressed protein contains Pfam profile...    27   7.7  

>At5g57800.1 68418.m07228 CER1 protein, putative (WAX2) similar to
           maize glossy1 homolog GI:2213643 from [Oryza sativa];
           contains Pfam profile PF01598: Sterol desaturase
          Length = 632

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +2

Query: 80  VLFVAFSYYYTYFLNSLFHICNSFFT 157
           VL V FS    YFL+  FH  N FFT
Sbjct: 133 VLHVTFSEPLYYFLHRSFHRNNYFFT 158


>At4g31980.1 68417.m04547 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 680

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 373 KNLVKYENCRVQNVGFLEGVKIGRCIL 453
           KN++ +E CR  N  FL+ + +  C +
Sbjct: 553 KNIIGFEQCRCSNKNFLDYIMLLGCFI 579


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,409,441
Number of Sequences: 28952
Number of extensions: 162494
Number of successful extensions: 272
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)